Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14640 | 3' | -52.5 | NC_003521.1 | + | 40915 | 0.68 | 0.981986 |
Target: 5'- aGCGAGGCGggggcgGcCCGGGg---GAGCGCc -3' miRNA: 3'- gCGCUUUGUa-----C-GGCCCaaagCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 173385 | 0.68 | 0.979898 |
Target: 5'- uCGgGggGCAUGCUGGuGUUgcucaGGGCGu -3' miRNA: 3'- -GCgCuuUGUACGGCC-CAAag---CUCGUg -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 102982 | 0.68 | 0.979898 |
Target: 5'- gGCGggGCGgcccaGCCGcGGcg-UGAGCGCc -3' miRNA: 3'- gCGCuuUGUa----CGGC-CCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 84538 | 0.68 | 0.979898 |
Target: 5'- aGCGAGAC--GCUGGGgggcUUgGAGUACu -3' miRNA: 3'- gCGCUUUGuaCGGCCCa---AAgCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 74470 | 0.68 | 0.979898 |
Target: 5'- aGCGAGcACGUcCUGGGcUUCGAGCu- -3' miRNA: 3'- gCGCUU-UGUAcGGCCCaAAGCUCGug -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 152363 | 0.68 | 0.977636 |
Target: 5'- -cUGggGCcgGCCGGGg--CG-GCGCg -3' miRNA: 3'- gcGCuuUGuaCGGCCCaaaGCuCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 81 | 0.68 | 0.977636 |
Target: 5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3' miRNA: 3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 240630 | 0.68 | 0.977636 |
Target: 5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3' miRNA: 3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 200309 | 0.68 | 0.977636 |
Target: 5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3' miRNA: 3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 64363 | 0.68 | 0.977636 |
Target: 5'- gGCGcccuGGACAUGcCCGaGGUg-CGGGCGCg -3' miRNA: 3'- gCGC----UUUGUAC-GGC-CCAaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 92685 | 0.68 | 0.972558 |
Target: 5'- gGCGAG--GUGCCGGGUcccUGGGaCACg -3' miRNA: 3'- gCGCUUugUACGGCCCAaa-GCUC-GUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 106002 | 0.68 | 0.972558 |
Target: 5'- gGCgGggGCAcguucaugagcUGCCaGGgcUCGGGCGCg -3' miRNA: 3'- gCG-CuuUGU-----------ACGGcCCaaAGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 163671 | 0.68 | 0.972558 |
Target: 5'- uGCGGAGC-UGCUcaacaaguGGGUcUCGcAGCGCa -3' miRNA: 3'- gCGCUUUGuACGG--------CCCAaAGC-UCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 106553 | 0.69 | 0.969728 |
Target: 5'- gCGCGAGugG-GCCGGucgcgaGAGCACg -3' miRNA: 3'- -GCGCUUugUaCGGCCcaaag-CUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 88293 | 0.69 | 0.969728 |
Target: 5'- aGC--AGCGUGCUGGGgc-UGAGCGCc -3' miRNA: 3'- gCGcuUUGUACGGCCCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 124440 | 0.69 | 0.966695 |
Target: 5'- gGCGAGACGUgGuuGGGccgCGgcGGCACg -3' miRNA: 3'- gCGCUUUGUA-CggCCCaaaGC--UCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 155394 | 0.69 | 0.966695 |
Target: 5'- aCGaCGAGGCcgGCgGGGggcUGGGCACc -3' miRNA: 3'- -GC-GCUUUGuaCGgCCCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 155331 | 0.69 | 0.956326 |
Target: 5'- cCGCGGGucCcgGCgGGGgcgCGGGCACc -3' miRNA: 3'- -GCGCUUu-GuaCGgCCCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 105948 | 0.69 | 0.956326 |
Target: 5'- gCGCGGAugAUGaCCGuGUgUCGGGUGCg -3' miRNA: 3'- -GCGCUUugUAC-GGCcCAaAGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 178802 | 0.7 | 0.948306 |
Target: 5'- gGCGAGGCAUGCCcGG---CGGGCGg -3' miRNA: 3'- gCGCUUUGUACGGcCCaaaGCUCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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