miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 5' -58.6 NC_003521.1 + 236501 1.05 0.003538
Target:  5'- cGAGGAGGACCAGCCACCUGCCAAGAGa -3'
miRNA:   3'- -CUCCUCCUGGUCGGUGGACGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 67076 0.74 0.391763
Target:  5'- aGAGGAGGAgCAGCaGCCUGCCucuGGc -3'
miRNA:   3'- -CUCCUCCUgGUCGgUGGACGGuu-CUu -5'
14641 5' -58.6 NC_003521.1 + 75259 0.73 0.488457
Target:  5'- cGAGGAGGGCCGGCUGCacaUGCacgucaucuuCGAGAAc -3'
miRNA:   3'- -CUCCUCCUGGUCGGUGg--ACG----------GUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 164832 0.72 0.516756
Target:  5'- gGAGGAGGaACCGGCgGCCggcGCCAGa-- -3'
miRNA:   3'- -CUCCUCC-UGGUCGgUGGa--CGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 23485 0.71 0.555453
Target:  5'- --cGAGGACCGGCCGCCguccGCCAc--- -3'
miRNA:   3'- cucCUCCUGGUCGGUGGa---CGGUucuu -5'
14641 5' -58.6 NC_003521.1 + 43633 0.7 0.604904
Target:  5'- cGAGGAGGAggcggCGGCCGCC-GCCGgAGAGc -3'
miRNA:   3'- -CUCCUCCUg----GUCGGUGGaCGGU-UCUU- -5'
14641 5' -58.6 NC_003521.1 + 159959 0.7 0.624865
Target:  5'- cGAGGAGuGCCAGCUACCcaGCCucAAGAu -3'
miRNA:   3'- -CUCCUCcUGGUCGGUGGa-CGG--UUCUu -5'
14641 5' -58.6 NC_003521.1 + 5830 0.69 0.664791
Target:  5'- cAGGGGGACC-GCUACC-GCUggGAc -3'
miRNA:   3'- cUCCUCCUGGuCGGUGGaCGGuuCUu -5'
14641 5' -58.6 NC_003521.1 + 238187 0.69 0.674728
Target:  5'- cAGGAGGAUCauAGCCAagUCgagGCCAAGAGc -3'
miRNA:   3'- cUCCUCCUGG--UCGGU--GGa--CGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 90249 0.69 0.674729
Target:  5'- gGAGGAGGAgCCGcGCCGCCgccGCCGc--- -3'
miRNA:   3'- -CUCCUCCU-GGU-CGGUGGa--CGGUucuu -5'
14641 5' -58.6 NC_003521.1 + 126835 0.69 0.678695
Target:  5'- aGAGGGuugcagccggugcccGG-CCGGCCGCCUGCCGu--- -3'
miRNA:   3'- -CUCCU---------------CCuGGUCGGUGGACGGUucuu -5'
14641 5' -58.6 NC_003521.1 + 134340 0.69 0.684633
Target:  5'- --cGGGGACCccccGCCGCCgaugcugGCCGAGAAg -3'
miRNA:   3'- cucCUCCUGGu---CGGUGGa------CGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 18790 0.69 0.684633
Target:  5'- -uGGAGGGCCAGCgCugCUuucgcgugGCCAAGu- -3'
miRNA:   3'- cuCCUCCUGGUCG-GugGA--------CGGUUCuu -5'
14641 5' -58.6 NC_003521.1 + 155471 0.68 0.721823
Target:  5'- gGAGGGGGugagagagacGCCGGCCugCggcgggccgcggGCCAAGGc -3'
miRNA:   3'- -CUCCUCC----------UGGUCGGugGa-----------CGGUUCUu -5'
14641 5' -58.6 NC_003521.1 + 144494 0.68 0.723755
Target:  5'- cGAGGAGGACCuggacGCCGaCUGUCGgcAGAu -3'
miRNA:   3'- -CUCCUCCUGGu----CGGUgGACGGU--UCUu -5'
14641 5' -58.6 NC_003521.1 + 87698 0.68 0.742899
Target:  5'- -uGGuGGACCaaAGCCGCCUGCUg---- -3'
miRNA:   3'- cuCCuCCUGG--UCGGUGGACGGuucuu -5'
14641 5' -58.6 NC_003521.1 + 45277 0.68 0.752337
Target:  5'- -uGGAgaucauGGACCGGgCGCCgcuggGCCAGGAGc -3'
miRNA:   3'- cuCCU------CCUGGUCgGUGGa----CGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 66737 0.68 0.761674
Target:  5'- -uGGAGGACCuccgGGCCAU-UGCUGAGGAg -3'
miRNA:   3'- cuCCUCCUGG----UCGGUGgACGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 13216 0.67 0.788995
Target:  5'- -uGGAGGGCCGaccggcGCCcaaGCCUGCCAu--- -3'
miRNA:   3'- cuCCUCCUGGU------CGG---UGGACGGUucuu -5'
14641 5' -58.6 NC_003521.1 + 49965 0.67 0.797843
Target:  5'- aGAGGAGGACgAGCgGCggguggGUCGAGGGa -3'
miRNA:   3'- -CUCCUCCUGgUCGgUGga----CGGUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.