miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 5' -58.6 NC_003521.1 + 94125 0.66 0.870159
Target:  5'- -cGGaAGGACgAGCgCACCgUGCuCAGGGAg -3'
miRNA:   3'- cuCC-UCCUGgUCG-GUGG-ACG-GUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 14742 0.66 0.862858
Target:  5'- uGGGcgugacGGGCCGGCCGCg-GCCGGGGc -3'
miRNA:   3'- cUCCu-----CCUGGUCGGUGgaCGGUUCUu -5'
14641 5' -58.6 NC_003521.1 + 112285 0.66 0.862858
Target:  5'- aAGGGccaccugacgucGGGCCAGCCgcACCUGCCcAGc- -3'
miRNA:   3'- cUCCU------------CCUGGUCGG--UGGACGGuUCuu -5'
14641 5' -58.6 NC_003521.1 + 99952 0.66 0.862858
Target:  5'- cAGGGGGGCgGcGgCGCCUcgGCCGAGAc -3'
miRNA:   3'- cUCCUCCUGgU-CgGUGGA--CGGUUCUu -5'
14641 5' -58.6 NC_003521.1 + 26249 0.66 0.85536
Target:  5'- cAGGAGGACCccucGCC-CCUGCUg---- -3'
miRNA:   3'- cUCCUCCUGGu---CGGuGGACGGuucuu -5'
14641 5' -58.6 NC_003521.1 + 228892 0.66 0.855359
Target:  5'- cAGGAGcACCAGCCggGCCcgGCUggGGGa -3'
miRNA:   3'- cUCCUCcUGGUCGG--UGGa-CGGuuCUU- -5'
14641 5' -58.6 NC_003521.1 + 135657 0.66 0.855359
Target:  5'- cGAGGAGu-CCAGCCcCCgucGCCuGGAAu -3'
miRNA:   3'- -CUCCUCcuGGUCGGuGGa--CGGuUCUU- -5'
14641 5' -58.6 NC_003521.1 + 178046 0.66 0.855359
Target:  5'- uGGGGGGugUAGCaCACCUcGCCcucAGGGc -3'
miRNA:   3'- cUCCUCCugGUCG-GUGGA-CGG---UUCUu -5'
14641 5' -58.6 NC_003521.1 + 131681 0.66 0.847668
Target:  5'- -uGGAGGACUGcGCCuuCUGCCA-GAGc -3'
miRNA:   3'- cuCCUCCUGGU-CGGugGACGGUuCUU- -5'
14641 5' -58.6 NC_003521.1 + 137869 0.66 0.847668
Target:  5'- uGAGGAaacuGGACCAGaucaaCCGCCUGuCCGAu-- -3'
miRNA:   3'- -CUCCU----CCUGGUC-----GGUGGAC-GGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 196697 0.66 0.847668
Target:  5'- gGAGGAGGAgCAGCgACg-GCCGAc-- -3'
miRNA:   3'- -CUCCUCCUgGUCGgUGgaCGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 16211 0.66 0.83979
Target:  5'- cGAGGuGGcggcGCCcuGCCGCCUGgCCGAGu- -3'
miRNA:   3'- -CUCCuCC----UGGu-CGGUGGAC-GGUUCuu -5'
14641 5' -58.6 NC_003521.1 + 73010 0.66 0.83979
Target:  5'- cGGGGGGGuCCAGCU-CCUGuCCAAc-- -3'
miRNA:   3'- -CUCCUCCuGGUCGGuGGAC-GGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 206113 0.66 0.83979
Target:  5'- aGGGAGG-CCGGUCAgCUGCUgcgcgaugcuGAGAAc -3'
miRNA:   3'- cUCCUCCuGGUCGGUgGACGG----------UUCUU- -5'
14641 5' -58.6 NC_003521.1 + 97576 0.66 0.831732
Target:  5'- gGAGGAGGAgUAGUaggagaugGCC-GCCGAGAAg -3'
miRNA:   3'- -CUCCUCCUgGUCGg-------UGGaCGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 186550 0.67 0.823501
Target:  5'- gGAGGcAGGGCCGGCacgaacuuCGCCUGCUugucuccAGAAc -3'
miRNA:   3'- -CUCC-UCCUGGUCG--------GUGGACGGu------UCUU- -5'
14641 5' -58.6 NC_003521.1 + 163947 0.67 0.823501
Target:  5'- cGAGGAGGAgucUCGGCCGCggacGCCgAAGAu -3'
miRNA:   3'- -CUCCUCCU---GGUCGGUGga--CGG-UUCUu -5'
14641 5' -58.6 NC_003521.1 + 155407 0.67 0.823501
Target:  5'- -cGGGGGGCUgggcaccggaGGCCugCUGCCGGc-- -3'
miRNA:   3'- cuCCUCCUGG----------UCGGugGACGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 7400 0.67 0.823501
Target:  5'- cGucGAGG-CCgucggAGCCACCgggGCCAGGAGc -3'
miRNA:   3'- -CucCUCCuGG-----UCGGUGGa--CGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 64413 0.67 0.823501
Target:  5'- aAGGAaccgGGAcCCAGCCAgCCUccguaGCCGGGAAc -3'
miRNA:   3'- cUCCU----CCU-GGUCGGU-GGA-----CGGUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.