miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 5' -58.6 NC_003521.1 + 75259 0.73 0.488457
Target:  5'- cGAGGAGGGCCGGCUGCacaUGCacgucaucuuCGAGAAc -3'
miRNA:   3'- -CUCCUCCUGGUCGGUGg--ACG----------GUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 228892 0.66 0.855359
Target:  5'- cAGGAGcACCAGCCggGCCcgGCUggGGGa -3'
miRNA:   3'- cUCCUCcUGGUCGG--UGGa-CGGuuCUU- -5'
14641 5' -58.6 NC_003521.1 + 135657 0.66 0.855359
Target:  5'- cGAGGAGu-CCAGCCcCCgucGCCuGGAAu -3'
miRNA:   3'- -CUCCUCcuGGUCGGuGGa--CGGuUCUU- -5'
14641 5' -58.6 NC_003521.1 + 178046 0.66 0.855359
Target:  5'- uGGGGGGugUAGCaCACCUcGCCcucAGGGc -3'
miRNA:   3'- cUCCUCCugGUCG-GUGGA-CGG---UUCUu -5'
14641 5' -58.6 NC_003521.1 + 196697 0.66 0.847668
Target:  5'- gGAGGAGGAgCAGCgACg-GCCGAc-- -3'
miRNA:   3'- -CUCCUCCUgGUCGgUGgaCGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 206113 0.66 0.83979
Target:  5'- aGGGAGG-CCGGUCAgCUGCUgcgcgaugcuGAGAAc -3'
miRNA:   3'- cUCCUCCuGGUCGGUgGACGG----------UUCUU- -5'
14641 5' -58.6 NC_003521.1 + 73010 0.66 0.83979
Target:  5'- cGGGGGGGuCCAGCU-CCUGuCCAAc-- -3'
miRNA:   3'- -CUCCUCCuGGUCGGuGGAC-GGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 97576 0.66 0.831732
Target:  5'- gGAGGAGGAgUAGUaggagaugGCC-GCCGAGAAg -3'
miRNA:   3'- -CUCCUCCUgGUCGg-------UGGaCGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 186550 0.67 0.823501
Target:  5'- gGAGGcAGGGCCGGCacgaacuuCGCCUGCUugucuccAGAAc -3'
miRNA:   3'- -CUCC-UCCUGGUCG--------GUGGACGGu------UCUU- -5'
14641 5' -58.6 NC_003521.1 + 163947 0.67 0.823501
Target:  5'- cGAGGAGGAgucUCGGCCGCggacGCCgAAGAu -3'
miRNA:   3'- -CUCCUCCU---GGUCGGUGga--CGG-UUCUu -5'
14641 5' -58.6 NC_003521.1 + 88674 0.67 0.815104
Target:  5'- -cGGuGGGCCGGCgGCCcgGCuCGGGGAc -3'
miRNA:   3'- cuCCuCCUGGUCGgUGGa-CG-GUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 45277 0.68 0.752337
Target:  5'- -uGGAgaucauGGACCGGgCGCCgcuggGCCAGGAGc -3'
miRNA:   3'- cuCCU------CCUGGUCgGUGGa----CGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 144494 0.68 0.723755
Target:  5'- cGAGGAGGACCuggacGCCGaCUGUCGgcAGAu -3'
miRNA:   3'- -CUCCUCCUGGu----CGGUgGACGGU--UCUu -5'
14641 5' -58.6 NC_003521.1 + 238187 0.69 0.674728
Target:  5'- cAGGAGGAUCauAGCCAagUCgagGCCAAGAGc -3'
miRNA:   3'- cUCCUCCUGG--UCGGU--GGa--CGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 43633 0.7 0.604904
Target:  5'- cGAGGAGGAggcggCGGCCGCC-GCCGgAGAGc -3'
miRNA:   3'- -CUCCUCCUg----GUCGGUGGaCGGU-UCUU- -5'
14641 5' -58.6 NC_003521.1 + 164832 0.72 0.516756
Target:  5'- gGAGGAGGaACCGGCgGCCggcGCCAGa-- -3'
miRNA:   3'- -CUCCUCC-UGGUCGgUGGa--CGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 236501 1.05 0.003538
Target:  5'- cGAGGAGGACCAGCCACCUGCCAAGAGa -3'
miRNA:   3'- -CUCCUCCUGGUCGGUGGACGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 67076 0.74 0.391763
Target:  5'- aGAGGAGGAgCAGCaGCCUGCCucuGGc -3'
miRNA:   3'- -CUCCUCCUgGUCGgUGGACGGuu-CUu -5'
14641 5' -58.6 NC_003521.1 + 23485 0.71 0.555453
Target:  5'- --cGAGGACCGGCCGCCguccGCCAc--- -3'
miRNA:   3'- cucCUCCUGGUCGGUGGa---CGGUucuu -5'
14641 5' -58.6 NC_003521.1 + 159959 0.7 0.624865
Target:  5'- cGAGGAGuGCCAGCUACCcaGCCucAAGAu -3'
miRNA:   3'- -CUCCUCcUGGUCGGUGGa-CGG--UUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.