Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14641 | 5' | -58.6 | NC_003521.1 | + | 90249 | 0.69 | 0.674729 |
Target: 5'- gGAGGAGGAgCCGcGCCGCCgccGCCGc--- -3' miRNA: 3'- -CUCCUCCU-GGU-CGGUGGa--CGGUucuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 155407 | 0.67 | 0.823501 |
Target: 5'- -cGGGGGGCUgggcaccggaGGCCugCUGCCGGc-- -3' miRNA: 3'- cuCCUCCUGG----------UCGGugGACGGUUcuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 131681 | 0.66 | 0.847668 |
Target: 5'- -uGGAGGACUGcGCCuuCUGCCA-GAGc -3' miRNA: 3'- cuCCUCCUGGU-CGGugGACGGUuCUU- -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 94125 | 0.66 | 0.870159 |
Target: 5'- -cGGaAGGACgAGCgCACCgUGCuCAGGGAg -3' miRNA: 3'- cuCC-UCCUGgUCG-GUGG-ACG-GUUCUU- -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 155471 | 0.68 | 0.721823 |
Target: 5'- gGAGGGGGugagagagacGCCGGCCugCggcgggccgcggGCCAAGGc -3' miRNA: 3'- -CUCCUCC----------UGGUCGGugGa-----------CGGUUCUu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 87698 | 0.68 | 0.742899 |
Target: 5'- -uGGuGGACCaaAGCCGCCUGCUg---- -3' miRNA: 3'- cuCCuCCUGG--UCGGUGGACGGuucuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 67076 | 0.74 | 0.391763 |
Target: 5'- aGAGGAGGAgCAGCaGCCUGCCucuGGc -3' miRNA: 3'- -CUCCUCCUgGUCGgUGGACGGuu-CUu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 23485 | 0.71 | 0.555453 |
Target: 5'- --cGAGGACCGGCCGCCguccGCCAc--- -3' miRNA: 3'- cucCUCCUGGUCGGUGGa---CGGUucuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 159959 | 0.7 | 0.624865 |
Target: 5'- cGAGGAGuGCCAGCUACCcaGCCucAAGAu -3' miRNA: 3'- -CUCCUCcUGGUCGGUGGa-CGG--UUCUu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 64413 | 0.67 | 0.823501 |
Target: 5'- aAGGAaccgGGAcCCAGCCAgCCUccguaGCCGGGAAc -3' miRNA: 3'- cUCCU----CCU-GGUCGGU-GGA-----CGGUUCUU- -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 193239 | 0.67 | 0.797843 |
Target: 5'- gGAGGAGGACUccgaccGCCACCgugGCCc---- -3' miRNA: 3'- -CUCCUCCUGGu-----CGGUGGa--CGGuucuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 49965 | 0.67 | 0.797843 |
Target: 5'- aGAGGAGGACgAGCgGCggguggGUCGAGGGa -3' miRNA: 3'- -CUCCUCCUGgUCGgUGga----CGGUUCUU- -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 126835 | 0.69 | 0.678695 |
Target: 5'- aGAGGGuugcagccggugcccGG-CCGGCCGCCUGCCGu--- -3' miRNA: 3'- -CUCCU---------------CCuGGUCGGUGGACGGUucuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 152079 | 0.67 | 0.806549 |
Target: 5'- -cGGAGGACCAcggcgacgugcGCCGgcUCUGCgAGGAGa -3' miRNA: 3'- cuCCUCCUGGU-----------CGGU--GGACGgUUCUU- -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 18790 | 0.69 | 0.684633 |
Target: 5'- -uGGAGGGCCAGCgCugCUuucgcgugGCCAAGu- -3' miRNA: 3'- cuCCUCCUGGUCG-GugGA--------CGGUUCuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 13216 | 0.67 | 0.788995 |
Target: 5'- -uGGAGGGCCGaccggcGCCcaaGCCUGCCAu--- -3' miRNA: 3'- cuCCUCCUGGU------CGG---UGGACGGUucuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 7400 | 0.67 | 0.823501 |
Target: 5'- cGucGAGG-CCgucggAGCCACCgggGCCAGGAGc -3' miRNA: 3'- -CucCUCCuGG-----UCGGUGGa--CGGUUCUU- -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 16211 | 0.66 | 0.83979 |
Target: 5'- cGAGGuGGcggcGCCcuGCCGCCUGgCCGAGu- -3' miRNA: 3'- -CUCCuCC----UGGu-CGGUGGAC-GGUUCuu -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 134340 | 0.69 | 0.684633 |
Target: 5'- --cGGGGACCccccGCCGCCgaugcugGCCGAGAAg -3' miRNA: 3'- cucCUCCUGGu---CGGUGGa------CGGUUCUU- -5' |
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14641 | 5' | -58.6 | NC_003521.1 | + | 66737 | 0.68 | 0.761674 |
Target: 5'- -uGGAGGACCuccgGGCCAU-UGCUGAGGAg -3' miRNA: 3'- cuCCUCCUGG----UCGGUGgACGGUUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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