miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 200412 0.69 0.871545
Target:  5'- uGG-UGGAcagcaCCGAguucgACAGCgaggUGCGCCACGa -3'
miRNA:   3'- -CCaACCU-----GGCUa----UGUCG----GCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 115402 0.69 0.878485
Target:  5'- cGGgcGG-CCGccACGGCCuccggacucaGCGCCGCGg -3'
miRNA:   3'- -CCaaCCuGGCuaUGUCGG----------CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 95134 0.69 0.878485
Target:  5'- ---aGGAuaGGguaagGCGGCCGCGCCgACGg -3'
miRNA:   3'- ccaaCCUggCUa----UGUCGGCGCGG-UGC- -5'
14642 3' -56.2 NC_003521.1 + 14751 0.69 0.885223
Target:  5'- ---cGGGCCGGccGCGGCCGgGgCGCGc -3'
miRNA:   3'- ccaaCCUGGCUa-UGUCGGCgCgGUGC- -5'
14642 3' -56.2 NC_003521.1 + 47433 0.69 0.885223
Target:  5'- ---cGGGCCagggcacAUGCAGCCggGCGCCGCa -3'
miRNA:   3'- ccaaCCUGGc------UAUGUCGG--CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 188364 0.69 0.891111
Target:  5'- cGGUgaaagGGAUaaCGcgACAGCCGCaacagaagaaaccGCCACGc -3'
miRNA:   3'- -CCAa----CCUG--GCuaUGUCGGCG-------------CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 32303 0.69 0.891755
Target:  5'- --aUGGGCCag-ACAGCUGCGgCGCa -3'
miRNA:   3'- ccaACCUGGcuaUGUCGGCGCgGUGc -5'
14642 3' -56.2 NC_003521.1 + 208716 0.69 0.891755
Target:  5'- ------cCCGAgauCAGCCGCGCCGCc -3'
miRNA:   3'- ccaaccuGGCUau-GUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 178949 0.69 0.891755
Target:  5'- --cUGGAgCGu--CAGCUGCGaCCACGa -3'
miRNA:   3'- ccaACCUgGCuauGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 150552 0.69 0.891755
Target:  5'- cGGUggUGGugCGGgugguggcgGCGGCgGCGgCGCGg -3'
miRNA:   3'- -CCA--ACCugGCUa--------UGUCGgCGCgGUGC- -5'
14642 3' -56.2 NC_003521.1 + 16962 0.68 0.897454
Target:  5'- --gUGGucCCGAgggACAGCCGCagcagcaGCCGCa -3'
miRNA:   3'- ccaACCu-GGCUa--UGUCGGCG-------CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 77759 0.68 0.898076
Target:  5'- uGGUUGGGCagGAUGUAGUCGCGgCAgGc -3'
miRNA:   3'- -CCAACCUGg-CUAUGUCGGCGCgGUgC- -5'
14642 3' -56.2 NC_003521.1 + 214991 0.68 0.898076
Target:  5'- aGGggGGugCGAgcCAGCgGCGUCuCGu -3'
miRNA:   3'- -CCaaCCugGCUauGUCGgCGCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 134596 0.68 0.898076
Target:  5'- ---aGGAUgGAgACGGCCauguGCGCCGCGc -3'
miRNA:   3'- ccaaCCUGgCUaUGUCGG----CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 150929 0.68 0.902375
Target:  5'- cGGcgugUGGGCCGAgcgcggucagaucaUcguGCAGUCGCGCgACGc -3'
miRNA:   3'- -CCa---ACCUGGCU--------------A---UGUCGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 60328 0.68 0.904185
Target:  5'- ---cGGcGCUGAUGCAGCCG-GCCAa- -3'
miRNA:   3'- ccaaCC-UGGCUAUGUCGGCgCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 73139 0.68 0.904185
Target:  5'- cGGcggGGGCaGcgGCGGCgGCGCCGCc -3'
miRNA:   3'- -CCaa-CCUGgCuaUGUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 88490 0.68 0.904185
Target:  5'- aGGgUGGGCgGGUagaGCGGCaCGCGCaGCGa -3'
miRNA:   3'- -CCaACCUGgCUA---UGUCG-GCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 223465 0.68 0.904185
Target:  5'- --cUGGGCCGccGC-GCCgGCGUCACGg -3'
miRNA:   3'- ccaACCUGGCuaUGuCGG-CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 49730 0.68 0.904185
Target:  5'- uGG-UGGACgaGAcGCAGCC-CGCCGCc -3'
miRNA:   3'- -CCaACCUGg-CUaUGUCGGcGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.