miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 39301 1.09 0.006524
Target:  5'- cGCCGUAGCGGAACCAUUCGUCGGCGUc -3'
miRNA:   3'- -CGGCAUCGCCUUGGUAAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 160328 0.69 0.930567
Target:  5'- aGCCGUgGGCGGcgcgguGGCCuccgUCGUCgagGGCGUc -3'
miRNA:   3'- -CGGCA-UCGCC------UUGGua--AGCAG---CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 36964 0.68 0.935446
Target:  5'- cGUCGcAGCGGAGCgGgugcUCGgCGGCGa -3'
miRNA:   3'- -CGGCaUCGCCUUGgUa---AGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 240582 0.66 0.984235
Target:  5'- uGCCGUGGCcgGGAucggugagucacggaACCGguuuccgCGgCGGCGUg -3'
miRNA:   3'- -CGGCAUCG--CCU---------------UGGUaa-----GCaGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 180655 0.75 0.655932
Target:  5'- uCUGUAGCGGcuCCAggCGUUGGCGc -3'
miRNA:   3'- cGGCAUCGCCuuGGUaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 91034 0.73 0.743285
Target:  5'- gGCCGUucGCGGAacGCCGUggCGUUgaGGCGUa -3'
miRNA:   3'- -CGGCAu-CGCCU--UGGUAa-GCAG--CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 23629 0.71 0.823257
Target:  5'- cGCCGUggccugccugGGCGGcaugGACCGUcgUCGUUGGCa- -3'
miRNA:   3'- -CGGCA----------UCGCC----UUGGUA--AGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 171655 0.71 0.83143
Target:  5'- cGCCGcGGCGGGcguCgGgagCGUCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCUu--GgUaa-GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 139760 0.7 0.876669
Target:  5'- uGCCGacGGCaGGAuCCGgcCGUCGGCGg -3'
miRNA:   3'- -CGGCa-UCG-CCUuGGUaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 234734 0.69 0.925463
Target:  5'- aGCCGUGGCGGAacgccgccgcACCGgcCGUC-GCa- -3'
miRNA:   3'- -CGGCAUCGCCU----------UGGUaaGCAGcCGca -5'
14642 5' -54.9 NC_003521.1 + 163408 0.69 0.902813
Target:  5'- gGCCGUGGC----CCcgUCGUCGGCu- -3'
miRNA:   3'- -CGGCAUCGccuuGGuaAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 223739 0.7 0.875972
Target:  5'- uCCgGUGGCGGGaacgugggucgccGCCAgcgguaUCGUCGGCGc -3'
miRNA:   3'- cGG-CAUCGCCU-------------UGGUa-----AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 123453 0.78 0.500025
Target:  5'- cGCCGUAGCgGGGACCGcggGUUGGCGa -3'
miRNA:   3'- -CGGCAUCG-CCUUGGUaagCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 113979 0.69 0.914583
Target:  5'- aGCUGUuccuGGCGGuGCaGUUCGUgGGCGa -3'
miRNA:   3'- -CGGCA----UCGCCuUGgUAAGCAgCCGCa -5'
14642 5' -54.9 NC_003521.1 + 195195 0.77 0.547603
Target:  5'- aGCCGgcGGCGGuGGCCGUcugCGUCGGCGc -3'
miRNA:   3'- -CGGCa-UCGCC-UUGGUAa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 135646 0.7 0.869611
Target:  5'- aUCGgcGgGGGGCCcagCGUCGGCGg -3'
miRNA:   3'- cGGCauCgCCUUGGuaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 52670 0.69 0.920135
Target:  5'- aGCgGcagcAGCGGcACCGgcagCGUCGGCGg -3'
miRNA:   3'- -CGgCa---UCGCCuUGGUaa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 91560 0.69 0.930567
Target:  5'- cGCCGacGCGGAacgacaugGCCAcgUCGUaGGCGUa -3'
miRNA:   3'- -CGGCauCGCCU--------UGGUa-AGCAgCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 17011 0.75 0.654943
Target:  5'- cGCgGUGGCGGcggcgcaGGCCcgUCGUCuGGCGg -3'
miRNA:   3'- -CGgCAUCGCC-------UUGGuaAGCAG-CCGCa -5'
14642 5' -54.9 NC_003521.1 + 94940 0.73 0.752646
Target:  5'- cGCCGccGGCGGc-CUcgUCGUCGGCGc -3'
miRNA:   3'- -CGGCa-UCGCCuuGGuaAGCAGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.