miRNA display CGI


Results 61 - 80 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 63147 0.66 0.643156
Target:  5'- aGCAGCuG-CGCGGGCugacgaucgacgcGCCGCC-CCa -3'
miRNA:   3'- cCGUCGcCaGCGUCCG-------------CGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 34426 0.66 0.644093
Target:  5'- gGGCGucGCGGUgcgacuccaCGUAGGCGCUGCgggCCu -3'
miRNA:   3'- -CCGU--CGCCA---------GCGUCCGCGGCGga-GGc -5'
14644 5' -64.3 NC_003521.1 + 57004 0.66 0.644093
Target:  5'- uGGCcGCGGUCaCGGaCGCCGCCaCgCGg -3'
miRNA:   3'- -CCGuCGCCAGcGUCcGCGGCGGaG-GC- -5'
14644 5' -64.3 NC_003521.1 + 87076 0.66 0.644093
Target:  5'- aGGCGGCGG-CGUAGGgGuuGaggUCCa -3'
miRNA:   3'- -CCGUCGCCaGCGUCCgCggCgg-AGGc -5'
14644 5' -64.3 NC_003521.1 + 197127 0.66 0.644093
Target:  5'- gGGUGGgGGUCGUuGuCGUCGUCUCCu -3'
miRNA:   3'- -CCGUCgCCAGCGuCcGCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 118095 0.67 0.587973
Target:  5'- cGGCGGCGccGUCGCccacgaccaCGaCCGCCUCCa -3'
miRNA:   3'- -CCGUCGC--CAGCGucc------GC-GGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 211381 0.67 0.587973
Target:  5'- cGUAGUaGGcCGuCAGGCGCCGgCUCuCGu -3'
miRNA:   3'- cCGUCG-CCaGC-GUCCGCGGCgGAG-GC- -5'
14644 5' -64.3 NC_003521.1 + 160785 0.67 0.625354
Target:  5'- cGGCGGCa--CGCGGGCGCgGgUCUUCGu -3'
miRNA:   3'- -CCGUCGccaGCGUCCGCGgC-GGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 222623 0.67 0.619733
Target:  5'- cGCGGCcgacaugugaucgaaGGgccgGCAGGCGCgcagCGCCUCCa -3'
miRNA:   3'- cCGUCG---------------CCag--CGUCCGCG----GCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 58419 0.67 0.606632
Target:  5'- uGCGGCGGUugacgaagcCGCA-GCGCUGCCgggcgaacuuUCCGc -3'
miRNA:   3'- cCGUCGCCA---------GCGUcCGCGGCGG----------AGGC- -5'
14644 5' -64.3 NC_003521.1 + 130754 0.67 0.615987
Target:  5'- -uCGGCGGgCGCGaGCGCCGCg-CCGg -3'
miRNA:   3'- ccGUCGCCaGCGUcCGCGGCGgaGGC- -5'
14644 5' -64.3 NC_003521.1 + 101140 0.67 0.615987
Target:  5'- gGGCAcGCGGaaagCGC-GGCGCgGUCUgCGu -3'
miRNA:   3'- -CCGU-CGCCa---GCGuCCGCGgCGGAgGC- -5'
14644 5' -64.3 NC_003521.1 + 135809 0.67 0.625354
Target:  5'- aGCGGCGGagGgAGGCGCgGCgacgaacgCUCCc -3'
miRNA:   3'- cCGUCGCCagCgUCCGCGgCG--------GAGGc -5'
14644 5' -64.3 NC_003521.1 + 53520 0.67 0.597292
Target:  5'- cGCAGCGGcCGauGGUGCUGUccgCUCCGg -3'
miRNA:   3'- cCGUCGCCaGCguCCGCGGCG---GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 130004 0.67 0.606632
Target:  5'- cGGCGGCGGcgCGCAacGGCcGCUgGCUUUCa -3'
miRNA:   3'- -CCGUCGCCa-GCGU--CCG-CGG-CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 43842 0.67 0.606632
Target:  5'- cGGCcGCGGgccCGUcacAGGCGCC-CCggCCGg -3'
miRNA:   3'- -CCGuCGCCa--GCG---UCCGCGGcGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 226884 0.67 0.629101
Target:  5'- gGGCAGCuG-CGgGGGCaccacggcggccagcGCgGCCUCCGc -3'
miRNA:   3'- -CCGUCGcCaGCgUCCG---------------CGgCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 54502 0.67 0.633787
Target:  5'- cGGCGGCccggcguggaccaGGaUCuGCAcGGCGCCGCUggggcCCGg -3'
miRNA:   3'- -CCGUCG-------------CC-AG-CGU-CCGCGGCGGa----GGC- -5'
14644 5' -64.3 NC_003521.1 + 164453 0.67 0.615987
Target:  5'- cGGCcGCGGcCGuCAcGGuCGCCGCUgCCGc -3'
miRNA:   3'- -CCGuCGCCaGC-GU-CC-GCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 74585 0.67 0.606632
Target:  5'- aGCGGCGG-CGC-GGCGucCCGCggCCGg -3'
miRNA:   3'- cCGUCGCCaGCGuCCGC--GGCGgaGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.