miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14659 3' -54.4 NC_003525.1 + 39613 0.66 0.759836
Target:  5'- gGGCAGC--CAgCAACAGG-CCACCc -3'
miRNA:   3'- gUCGUUGucGUgGUUGUCCuGGUGGu -5'
14659 3' -54.4 NC_003525.1 + 47465 0.66 0.758797
Target:  5'- aCGGUAauuGCAGUaaugaaaGCCAuCAGGGCCGCa- -3'
miRNA:   3'- -GUCGU---UGUCG-------UGGUuGUCCUGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 4682 0.66 0.749386
Target:  5'- aCAGCAGgaAGCGCCAaaaGCGGuuUCGCCGg -3'
miRNA:   3'- -GUCGUUg-UCGUGGU---UGUCcuGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 3848 0.66 0.749386
Target:  5'- aAGCAACGG-GCCgAACAGGaaGCCGCa- -3'
miRNA:   3'- gUCGUUGUCgUGG-UUGUCC--UGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 16168 0.66 0.748334
Target:  5'- uCAGCAcugagcacagaacGCAGCACCAAaaa-GCCAUCAg -3'
miRNA:   3'- -GUCGU-------------UGUCGUGGUUguccUGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 52873 0.66 0.728132
Target:  5'- cCAGCAAgGGcCACCAuauCAcuACCGCCAu -3'
miRNA:   3'- -GUCGUUgUC-GUGGUu--GUccUGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 19780 0.67 0.717351
Target:  5'- uCAGguACAagcGCACCAAuCAGGuuuacacccuucGCCACCc -3'
miRNA:   3'- -GUCguUGU---CGUGGUU-GUCC------------UGGUGGu -5'
14659 3' -54.4 NC_003525.1 + 20463 0.67 0.706483
Target:  5'- cCGGCAACcGCACCGAauGGAgCCcCCAu -3'
miRNA:   3'- -GUCGUUGuCGUGGUUguCCU-GGuGGU- -5'
14659 3' -54.4 NC_003525.1 + 7998 0.67 0.706483
Target:  5'- gAGCAaauauuacccugACGGCGCUGACAGuuUCACCGg -3'
miRNA:   3'- gUCGU------------UGUCGUGGUUGUCcuGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 9682 0.67 0.706483
Target:  5'- aCAGguGCGGCagGCCcgGugGGGGCgACCGg -3'
miRNA:   3'- -GUCguUGUCG--UGG--UugUCCUGgUGGU- -5'
14659 3' -54.4 NC_003525.1 + 31967 0.67 0.695541
Target:  5'- gGGCAcucCAGCGCCAGCAuGGuCUACa- -3'
miRNA:   3'- gUCGUu--GUCGUGGUUGU-CCuGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 9642 0.67 0.684536
Target:  5'- -uGCGGCAgGC-CCGGCAGGcCCACa- -3'
miRNA:   3'- guCGUUGU-CGuGGUUGUCCuGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 8877 0.67 0.681224
Target:  5'- cCAGCAGCccuacagcccccugAGCACCAACGucACCACg- -3'
miRNA:   3'- -GUCGUUG--------------UCGUGGUUGUccUGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 26796 0.68 0.651258
Target:  5'- cCGGCAGCacgGGaCGCCGuCAGGucacccGCCGCCAc -3'
miRNA:   3'- -GUCGUUG---UC-GUGGUuGUCC------UGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 59430 0.68 0.651258
Target:  5'- -uGCAGCAGCGCCAGCGuGAUguugCugCAc -3'
miRNA:   3'- guCGUUGUCGUGGUUGUcCUG----GugGU- -5'
14659 3' -54.4 NC_003525.1 + 17105 0.68 0.640114
Target:  5'- uGGCAuUAGCGCCGGugcCAGGuguuuuagcACCGCCAc -3'
miRNA:   3'- gUCGUuGUCGUGGUU---GUCC---------UGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 61085 0.68 0.625618
Target:  5'- uGGCugaGACAGCACCAAaacuucgugcugacCGGGaaagaaucaacGCCGCCAg -3'
miRNA:   3'- gUCG---UUGUCGUGGUU--------------GUCC-----------UGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 61664 0.68 0.617815
Target:  5'- -cGUAGCGGUGCCAGCGGuGGCUAUa- -3'
miRNA:   3'- guCGUUGUCGUGGUUGUC-CUGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 59387 0.68 0.60668
Target:  5'- aAGCGcaccACAGgcUACCAGCAGGACaauaauCACCAc -3'
miRNA:   3'- gUCGU----UGUC--GUGGUUGUCCUG------GUGGU- -5'
14659 3' -54.4 NC_003525.1 + 3191 0.69 0.551523
Target:  5'- gGGCAcauGCAGCugCAcaACGGGAUaauGCCAg -3'
miRNA:   3'- gUCGU---UGUCGugGU--UGUCCUGg--UGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.