miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1486 3' -56.7 NC_001335.1 + 10908 0.66 0.603228
Target:  5'- cUGCAGCcGCUcggguGGCGaagaAGGACGCCg -3'
miRNA:   3'- uACGUCGaUGG-----CCGUagg-UCCUGUGG- -5'
1486 3' -56.7 NC_001335.1 + 11901 0.66 0.581162
Target:  5'- -gGuCGGCguuggaGCCGGUgccGUCCGGGucCACCa -3'
miRNA:   3'- uaC-GUCGa-----UGGCCG---UAGGUCCu-GUGG- -5'
1486 3' -56.7 NC_001335.1 + 17655 0.66 0.581162
Target:  5'- gGUGCAGUgaagGGCuUCCuGGGCAUCg -3'
miRNA:   3'- -UACGUCGauggCCGuAGGuCCUGUGG- -5'
1486 3' -56.7 NC_001335.1 + 17553 0.66 0.581162
Target:  5'- cUGCAG--GCCGGUaaggaucucGUCCAGGGC-CUg -3'
miRNA:   3'- uACGUCgaUGGCCG---------UAGGUCCUGuGG- -5'
1486 3' -56.7 NC_001335.1 + 3447 0.66 0.569095
Target:  5'- -cGCAGggGCUGGCAggcgacaUCCAaGACGCUc -3'
miRNA:   3'- uaCGUCgaUGGCCGU-------AGGUcCUGUGG- -5'
1486 3' -56.7 NC_001335.1 + 7695 0.66 0.559269
Target:  5'- gAUGUcGuCUAUCGGCAgCCAGGuggaguCGCCu -3'
miRNA:   3'- -UACGuC-GAUGGCCGUaGGUCCu-----GUGG- -5'
1486 3' -56.7 NC_001335.1 + 26243 0.67 0.548407
Target:  5'- -aGCGGCaGCgGGC-UCCAGGcC-CCg -3'
miRNA:   3'- uaCGUCGaUGgCCGuAGGUCCuGuGG- -5'
1486 3' -56.7 NC_001335.1 + 1226 0.67 0.548407
Target:  5'- -gGCAGC-GCCGGUA-CCGGaGGCgucACCg -3'
miRNA:   3'- uaCGUCGaUGGCCGUaGGUC-CUG---UGG- -5'
1486 3' -56.7 NC_001335.1 + 27389 0.67 0.536536
Target:  5'- cGUGCAGaccgcaUAugaagUCGGCGUCUgccucggagagguGGGACGCCa -3'
miRNA:   3'- -UACGUCg-----AU-----GGCCGUAGG-------------UCCUGUGG- -5'
1486 3' -56.7 NC_001335.1 + 29225 0.67 0.52689
Target:  5'- uUGCGGUcGCCcgacagcGCcgCCAGGACGCg -3'
miRNA:   3'- uACGUCGaUGGc------CGuaGGUCCUGUGg -5'
1486 3' -56.7 NC_001335.1 + 630 0.67 0.52689
Target:  5'- -cGCGGUgACgCGGCAuauUCCAGGcCGCg -3'
miRNA:   3'- uaCGUCGaUG-GCCGU---AGGUCCuGUGg -5'
1486 3' -56.7 NC_001335.1 + 41415 0.67 0.516251
Target:  5'- gGUGCcGggGCCGGCGcagaCCAGGACuagcugGCCu -3'
miRNA:   3'- -UACGuCgaUGGCCGUa---GGUCCUG------UGG- -5'
1486 3' -56.7 NC_001335.1 + 38759 0.67 0.516251
Target:  5'- -cGCAGCggagACCGGCG---AGGGCuucGCCg -3'
miRNA:   3'- uaCGUCGa---UGGCCGUaggUCCUG---UGG- -5'
1486 3' -56.7 NC_001335.1 + 8560 0.67 0.516251
Target:  5'- gAUGCAGCaacUGCUGGC-UCaCGucGGAUACCc -3'
miRNA:   3'- -UACGUCG---AUGGCCGuAG-GU--CCUGUGG- -5'
1486 3' -56.7 NC_001335.1 + 13207 0.67 0.495239
Target:  5'- gAUGCAGgU-CUGGUA-CCGGG-CACCg -3'
miRNA:   3'- -UACGUCgAuGGCCGUaGGUCCuGUGG- -5'
1486 3' -56.7 NC_001335.1 + 13196 0.68 0.478714
Target:  5'- -aGCGGaccaggccgucgaaUACCGGCAUCCcGGcCAUCg -3'
miRNA:   3'- uaCGUCg-------------AUGGCCGUAGGuCCuGUGG- -5'
1486 3' -56.7 NC_001335.1 + 42410 0.68 0.474625
Target:  5'- -cGCGGCUcgcGCCGGUcggccgAUUCAcGACGCCu -3'
miRNA:   3'- uaCGUCGA---UGGCCG------UAGGUcCUGUGG- -5'
1486 3' -56.7 NC_001335.1 + 29007 0.68 0.46448
Target:  5'- -gGCGGCUGCCGGUGgacagCuCGcGGACAUa -3'
miRNA:   3'- uaCGUCGAUGGCCGUa----G-GU-CCUGUGg -5'
1486 3' -56.7 NC_001335.1 + 37275 0.69 0.425082
Target:  5'- gAUGCAGCUccccgaggacgAgCGGUAUCCcaaGGGGCcucGCCa -3'
miRNA:   3'- -UACGUCGA-----------UgGCCGUAGG---UCCUG---UGG- -5'
1486 3' -56.7 NC_001335.1 + 17627 0.69 0.425082
Target:  5'- -gGCcaAGgaGCUGGCGUCCAGcGugGCUg -3'
miRNA:   3'- uaCG--UCgaUGGCCGUAGGUC-CugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.