Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1486 | 3' | -56.7 | NC_001335.1 | + | 27389 | 0.67 | 0.536536 |
Target: 5'- cGUGCAGaccgcaUAugaagUCGGCGUCUgccucggagagguGGGACGCCa -3' miRNA: 3'- -UACGUCg-----AU-----GGCCGUAGG-------------UCCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 1226 | 0.67 | 0.548407 |
Target: 5'- -gGCAGC-GCCGGUA-CCGGaGGCgucACCg -3' miRNA: 3'- uaCGUCGaUGGCCGUaGGUC-CUG---UGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 26243 | 0.67 | 0.548407 |
Target: 5'- -aGCGGCaGCgGGC-UCCAGGcC-CCg -3' miRNA: 3'- uaCGUCGaUGgCCGuAGGUCCuGuGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 7695 | 0.66 | 0.559269 |
Target: 5'- gAUGUcGuCUAUCGGCAgCCAGGuggaguCGCCu -3' miRNA: 3'- -UACGuC-GAUGGCCGUaGGUCCu-----GUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 3447 | 0.66 | 0.569095 |
Target: 5'- -cGCAGggGCUGGCAggcgacaUCCAaGACGCUc -3' miRNA: 3'- uaCGUCgaUGGCCGU-------AGGUcCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 17655 | 0.66 | 0.581162 |
Target: 5'- gGUGCAGUgaagGGCuUCCuGGGCAUCg -3' miRNA: 3'- -UACGUCGauggCCGuAGGuCCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 17553 | 0.66 | 0.581162 |
Target: 5'- cUGCAG--GCCGGUaaggaucucGUCCAGGGC-CUg -3' miRNA: 3'- uACGUCgaUGGCCG---------UAGGUCCUGuGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 11901 | 0.66 | 0.581162 |
Target: 5'- -gGuCGGCguuggaGCCGGUgccGUCCGGGucCACCa -3' miRNA: 3'- uaC-GUCGa-----UGGCCG---UAGGUCCu-GUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 10908 | 0.66 | 0.603228 |
Target: 5'- cUGCAGCcGCUcggguGGCGaagaAGGACGCCg -3' miRNA: 3'- uACGUCGaUGG-----CCGUagg-UCCUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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