miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1507 5' -50.9 NC_001335.1 + 39270 1.15 0.001071
Target:  5'- uCCAUCACCAUGCAGAACCACGACAGCa -3'
miRNA:   3'- -GGUAGUGGUACGUCUUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 17078 0.77 0.362866
Target:  5'- gCCGUCGCuCAUGCAGAGCUuc--CAGCa -3'
miRNA:   3'- -GGUAGUG-GUACGUCUUGGugcuGUCG- -5'
1507 5' -50.9 NC_001335.1 + 8706 0.76 0.399464
Target:  5'- gCAUCGCCGagGCGGAAacCCuCGACGGCc -3'
miRNA:   3'- gGUAGUGGUa-CGUCUU--GGuGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 6439 0.76 0.408975
Target:  5'- gUCAUCGCCcaGCucaucGAGCUugGACAGCg -3'
miRNA:   3'- -GGUAGUGGuaCGu----CUUGGugCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 34136 0.76 0.408975
Target:  5'- gCGUCugGCCAaGgAGGGCUACGGCAGCu -3'
miRNA:   3'- gGUAG--UGGUaCgUCUUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 1955 0.75 0.458569
Target:  5'- uUCAUCGaggcGCAGAuCCACGGCGGCg -3'
miRNA:   3'- -GGUAGUgguaCGUCUuGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 11692 0.74 0.47615
Target:  5'- aCCugggCACCAUGCGGAccaaggucgcgaccGCCuucGCGAUGGCg -3'
miRNA:   3'- -GGua--GUGGUACGUCU--------------UGG---UGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 27077 0.74 0.500454
Target:  5'- gCgAUCuACCccgGUGCAGGcgACUGCGACAGCa -3'
miRNA:   3'- -GgUAG-UGG---UACGUCU--UGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 9038 0.74 0.511192
Target:  5'- cCCAcUCACCGUcagcGCGGAACCAgcCGAUGGUc -3'
miRNA:   3'- -GGU-AGUGGUA----CGUCUUGGU--GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 1245 0.73 0.532944
Target:  5'- gCGUCACCGgugGCggcggaaguGGAGCCGgCGGCGGUg -3'
miRNA:   3'- gGUAGUGGUa--CG---------UCUUGGU-GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 16177 0.73 0.577352
Target:  5'- aUCGUCGCCGUaGCAGcuCCGCuGGuCGGCa -3'
miRNA:   3'- -GGUAGUGGUA-CGUCuuGGUG-CU-GUCG- -5'
1507 5' -50.9 NC_001335.1 + 17213 0.72 0.588595
Target:  5'- gCCGUCGCCAgcgccgggaugUGCGGGGCCA-GACuGGUc -3'
miRNA:   3'- -GGUAGUGGU-----------ACGUCUUGGUgCUG-UCG- -5'
1507 5' -50.9 NC_001335.1 + 27916 0.72 0.588595
Target:  5'- aCAUUcaagaGCCAgugGgAGAucaACCACGACGGCg -3'
miRNA:   3'- gGUAG-----UGGUa--CgUCU---UGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 18918 0.72 0.588595
Target:  5'- gCGUCuCCuuggGCAGuuccucccacGGCCACGGCGGCg -3'
miRNA:   3'- gGUAGuGGua--CGUC----------UUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 29216 0.72 0.611189
Target:  5'- uCgAUCAUguUGCGGucGCC-CGACAGCg -3'
miRNA:   3'- -GgUAGUGguACGUCu-UGGuGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 36509 0.72 0.622519
Target:  5'- gCAUCaaGCCAcacacGCuGGGCUACGGCGGCa -3'
miRNA:   3'- gGUAG--UGGUa----CGuCUUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 51910 0.72 0.622519
Target:  5'- aCCGagACCAgcgaCAGcgacggggcgacGACCACGACAGCg -3'
miRNA:   3'- -GGUagUGGUac--GUC------------UUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 21366 0.72 0.633859
Target:  5'- cUCAUCACCAgcuccCGGAGCCAguCGACGuGCc -3'
miRNA:   3'- -GGUAGUGGUac---GUCUUGGU--GCUGU-CG- -5'
1507 5' -50.9 NC_001335.1 + 8336 0.71 0.645197
Target:  5'- uUCGUgACCuUGC-GAAUCGCGAUGGCg -3'
miRNA:   3'- -GGUAgUGGuACGuCUUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 16838 0.71 0.645197
Target:  5'- cCCAUCGCC-UGCAGAccggacuCCAUGAgcCGGUu -3'
miRNA:   3'- -GGUAGUGGuACGUCUu------GGUGCU--GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.