miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1507 5' -50.9 NC_001335.1 + 1245 0.73 0.532944
Target:  5'- gCGUCACCGgugGCggcggaaguGGAGCCGgCGGCGGUg -3'
miRNA:   3'- gGUAGUGGUa--CG---------UCUUGGU-GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 1955 0.75 0.458569
Target:  5'- uUCAUCGaggcGCAGAuCCACGGCGGCg -3'
miRNA:   3'- -GGUAGUgguaCGUCUuGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 3101 0.66 0.920608
Target:  5'- gCC-UCGCCAagGC-GAGCgGCGGgAGCu -3'
miRNA:   3'- -GGuAGUGGUa-CGuCUUGgUGCUgUCG- -5'
1507 5' -50.9 NC_001335.1 + 4146 0.71 0.690308
Target:  5'- gCC-UCGCCGgucgGCAuguGAACCaacugccaGCGGCAGCg -3'
miRNA:   3'- -GGuAGUGGUa---CGU---CUUGG--------UGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 4154 0.69 0.755938
Target:  5'- cCCAUCAgagAUGguGGGCCA-GACGGCc -3'
miRNA:   3'- -GGUAGUgg-UACguCUUGGUgCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 4948 0.69 0.76648
Target:  5'- gCCGcCuCCGUGCuGGAGCC-CGACgAGCa -3'
miRNA:   3'- -GGUaGuGGUACG-UCUUGGuGCUG-UCG- -5'
1507 5' -50.9 NC_001335.1 + 5580 0.66 0.926661
Target:  5'- cCCAgaUCAggacgaugcCCA-GCAGuGCCGgGGCGGCg -3'
miRNA:   3'- -GGU--AGU---------GGUaCGUCuUGGUgCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 5856 0.71 0.689188
Target:  5'- gCGUgGCCAgcggGCcgagcugggggagAGAACCGCuGACGGCg -3'
miRNA:   3'- gGUAgUGGUa---CG-------------UCUUGGUG-CUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 5937 0.67 0.882916
Target:  5'- aCAUCuACCGgugGCAGcccaucggcaacuACC-CGGCAGCg -3'
miRNA:   3'- gGUAG-UGGUa--CGUCu------------UGGuGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 6439 0.76 0.408975
Target:  5'- gUCAUCGCCcaGCucaucGAGCUugGACAGCg -3'
miRNA:   3'- -GGUAGUGGuaCGu----CUUGGugCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 7049 0.7 0.723557
Target:  5'- ---cCGCCAaGCAGAG-CGCGGCGGUg -3'
miRNA:   3'- gguaGUGGUaCGUCUUgGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 7161 0.66 0.926661
Target:  5'- uUCGUCugguCCugGCuGAcgGCCGCGACGGUg -3'
miRNA:   3'- -GGUAGu---GGuaCGuCU--UGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 7801 0.69 0.755938
Target:  5'- uCCAUUccuGCgGUG-AGAGCCACGAguccuCAGCg -3'
miRNA:   3'- -GGUAG---UGgUACgUCUUGGUGCU-----GUCG- -5'
1507 5' -50.9 NC_001335.1 + 8336 0.71 0.645197
Target:  5'- uUCGUgACCuUGC-GAAUCGCGAUGGCg -3'
miRNA:   3'- -GGUAgUGGuACGuCUUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 8706 0.76 0.399464
Target:  5'- gCAUCGCCGagGCGGAAacCCuCGACGGCc -3'
miRNA:   3'- gGUAGUGGUa-CGUCUU--GGuGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 9038 0.74 0.511192
Target:  5'- cCCAcUCACCGUcagcGCGGAACCAgcCGAUGGUc -3'
miRNA:   3'- -GGU-AGUGGUA----CGUCUUGGU--GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 9850 0.66 0.926661
Target:  5'- gCGUgACC--GCAGAGgaguaCGCGGCGGCu -3'
miRNA:   3'- gGUAgUGGuaCGUCUUg----GUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 10266 0.67 0.853329
Target:  5'- cCCcgCAgaUCGUGCAGGGCUggGCGAgGGUc -3'
miRNA:   3'- -GGuaGU--GGUACGUCUUGG--UGCUgUCG- -5'
1507 5' -50.9 NC_001335.1 + 10341 0.68 0.835491
Target:  5'- cCCAgccCugCAcgaucUGCGGGGCCGgaucguucuUGACAGCg -3'
miRNA:   3'- -GGUa--GugGU-----ACGUCUUGGU---------GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 10999 0.67 0.853329
Target:  5'- aCCGcuuaCACCGaacUGCAGAACCAguuggGACAGg -3'
miRNA:   3'- -GGUa---GUGGU---ACGUCUUGGUg----CUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.