miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1507 5' -50.9 NC_001335.1 + 39270 1.15 0.001071
Target:  5'- uCCAUCACCAUGCAGAACCACGACAGCa -3'
miRNA:   3'- -GGUAGUGGUACGUCUUGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 10999 0.67 0.853329
Target:  5'- aCCGcuuaCACCGaacUGCAGAACCAguuggGACAGg -3'
miRNA:   3'- -GGUa---GUGGU---ACGUCUUGGUg----CUGUCg -5'
1507 5' -50.9 NC_001335.1 + 20787 0.67 0.870184
Target:  5'- gCCAUCGCaucGCAGAuCCacaagACGAgGGCu -3'
miRNA:   3'- -GGUAGUGguaCGUCUuGG-----UGCUgUCG- -5'
1507 5' -50.9 NC_001335.1 + 50097 0.66 0.926661
Target:  5'- gCGUCAcgcaacaguucCCAguugugcaGCAGGACCGagcUGACAGCc -3'
miRNA:   3'- gGUAGU-----------GGUa-------CGUCUUGGU---GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 11692 0.74 0.47615
Target:  5'- aCCugggCACCAUGCGGAccaaggucgcgaccGCCuucGCGAUGGCg -3'
miRNA:   3'- -GGua--GUGGUACGUCU--------------UGG---UGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 1245 0.73 0.532944
Target:  5'- gCGUCACCGgugGCggcggaaguGGAGCCGgCGGCGGUg -3'
miRNA:   3'- gGUAGUGGUa--CG---------UCUUGGU-GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 29216 0.72 0.611189
Target:  5'- uCgAUCAUguUGCGGucGCC-CGACAGCg -3'
miRNA:   3'- -GgUAGUGguACGUCu-UGGuGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 12442 0.7 0.701467
Target:  5'- --uUCGCCAaGCAGuugaucGCCACuGGCGGCu -3'
miRNA:   3'- gguAGUGGUaCGUCu-----UGGUG-CUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 13644 0.69 0.797176
Target:  5'- aCCAUCACCGaGCAaGACgGCGAUg-- -3'
miRNA:   3'- -GGUAGUGGUaCGUcUUGgUGCUGucg -5'
1507 5' -50.9 NC_001335.1 + 10266 0.67 0.853329
Target:  5'- cCCcgCAgaUCGUGCAGGGCUggGCGAgGGUc -3'
miRNA:   3'- -GGuaGU--GGUACGUCUUGG--UGCUgUCG- -5'
1507 5' -50.9 NC_001335.1 + 22545 0.68 0.835491
Target:  5'- cUCGUCuGCCAUcGCGGAGCU---GCAGCg -3'
miRNA:   3'- -GGUAG-UGGUA-CGUCUUGGugcUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 32861 0.69 0.780989
Target:  5'- aCCGUCGCCGacgGCgcggucucaggcucaGGAGCCGgGGcCGGCu -3'
miRNA:   3'- -GGUAGUGGUa--CG---------------UCUUGGUgCU-GUCG- -5'
1507 5' -50.9 NC_001335.1 + 17078 0.77 0.362866
Target:  5'- gCCGUCGCuCAUGCAGAGCUuc--CAGCa -3'
miRNA:   3'- -GGUAGUG-GUACGUCUUGGugcuGUCG- -5'
1507 5' -50.9 NC_001335.1 + 29518 0.68 0.844529
Target:  5'- gCCAUCuucgACCAgcuugucgaGCAGAGCCGCguuGACcuGGCg -3'
miRNA:   3'- -GGUAG----UGGUa--------CGUCUUGGUG---CUG--UCG- -5'
1507 5' -50.9 NC_001335.1 + 6439 0.76 0.408975
Target:  5'- gUCAUCGCCcaGCucaucGAGCUugGACAGCg -3'
miRNA:   3'- -GGUAGUGGuaCGu----CUUGGugCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 4154 0.69 0.755938
Target:  5'- cCCAUCAgagAUGguGGGCCA-GACGGCc -3'
miRNA:   3'- -GGUAGUgg-UACguCUUGGUgCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 46716 0.68 0.844529
Target:  5'- aCCGUCuuGCaGUGCAGGgccugaGCCAUGccguGCAGCa -3'
miRNA:   3'- -GGUAG--UGgUACGUCU------UGGUGC----UGUCG- -5'
1507 5' -50.9 NC_001335.1 + 29314 0.67 0.861884
Target:  5'- gCAUCGCCGcacgaucCAGuccGACgACGGCAGCg -3'
miRNA:   3'- gGUAGUGGUac-----GUC---UUGgUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 1955 0.75 0.458569
Target:  5'- uUCAUCGaggcGCAGAuCCACGGCGGCg -3'
miRNA:   3'- -GGUAGUgguaCGUCUuGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 16177 0.73 0.577352
Target:  5'- aUCGUCGCCGUaGCAGcuCCGCuGGuCGGCa -3'
miRNA:   3'- -GGUAGUGGUA-CGUCuuGGUG-CU-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.