miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1523 3' -52.1 NC_001335.1 + 40199 0.66 0.885049
Target:  5'- ---aGCgGAUCGACCcggaGAGCCCGg- -3'
miRNA:   3'- agcaUGgUUAGCUGGag--CUUGGGCau -5'
1523 3' -52.1 NC_001335.1 + 2744 0.66 0.877316
Target:  5'- cUCGUuuuCCGAUUgGGCCUCGcguGCCCa-- -3'
miRNA:   3'- -AGCAu--GGUUAG-CUGGAGCu--UGGGcau -5'
1523 3' -52.1 NC_001335.1 + 13579 0.66 0.877316
Target:  5'- aCGUACCGGgccgCGACCUUGuuCgCGUu -3'
miRNA:   3'- aGCAUGGUUa---GCUGGAGCuuGgGCAu -5'
1523 3' -52.1 NC_001335.1 + 20767 0.66 0.869319
Target:  5'- -aGU-CCGGUgaCGAuguCCUCGAGCCCGg- -3'
miRNA:   3'- agCAuGGUUA--GCU---GGAGCUUGGGCau -5'
1523 3' -52.1 NC_001335.1 + 42329 0.66 0.861064
Target:  5'- gUCGUgaAUCGGcCGACCggcgCGAGCCgCGUGc -3'
miRNA:   3'- -AGCA--UGGUUaGCUGGa---GCUUGG-GCAU- -5'
1523 3' -52.1 NC_001335.1 + 6344 0.66 0.852561
Target:  5'- -gGUucuCCAGUCGGuCCUCGAggauGCCCa-- -3'
miRNA:   3'- agCAu--GGUUAGCU-GGAGCU----UGGGcau -5'
1523 3' -52.1 NC_001335.1 + 9674 0.66 0.843817
Target:  5'- uUCGUGgCugcGUCGGCCUUG-GCCgCGUAg -3'
miRNA:   3'- -AGCAUgGu--UAGCUGGAGCuUGG-GCAU- -5'
1523 3' -52.1 NC_001335.1 + 32206 0.67 0.83484
Target:  5'- cUGcUACCGGUCGuuccACCgacCGAACCCGg- -3'
miRNA:   3'- aGC-AUGGUUAGC----UGGa--GCUUGGGCau -5'
1523 3' -52.1 NC_001335.1 + 3215 0.67 0.83484
Target:  5'- cUCGgcaacCCAcUCGACCUCGAgaugcucuGCCUGg- -3'
miRNA:   3'- -AGCau---GGUuAGCUGGAGCU--------UGGGCau -5'
1523 3' -52.1 NC_001335.1 + 48586 0.67 0.816231
Target:  5'- cUCG-ACCGAagUGACCUCGAcaaccauCCCGUc -3'
miRNA:   3'- -AGCaUGGUUa-GCUGGAGCUu------GGGCAu -5'
1523 3' -52.1 NC_001335.1 + 14543 0.67 0.796814
Target:  5'- uUC-UGCCAGgagcccUUGACCUCGGACUCGc- -3'
miRNA:   3'- -AGcAUGGUU------AGCUGGAGCUUGGGCau -5'
1523 3' -52.1 NC_001335.1 + 45153 0.68 0.766373
Target:  5'- aUGUACCu-UCG-CCUUGAAUCCGg- -3'
miRNA:   3'- aGCAUGGuuAGCuGGAGCUUGGGCau -5'
1523 3' -52.1 NC_001335.1 + 21808 0.68 0.766373
Target:  5'- aCGagUCGAUCaACCUCGAGCgCCGUGa -3'
miRNA:   3'- aGCauGGUUAGcUGGAGCUUG-GGCAU- -5'
1523 3' -52.1 NC_001335.1 + 9040 0.68 0.766373
Target:  5'- cCGaACCGGaccCGGCuCUCGGACCUGUAc -3'
miRNA:   3'- aGCaUGGUUa--GCUG-GAGCUUGGGCAU- -5'
1523 3' -52.1 NC_001335.1 + 12323 0.68 0.745339
Target:  5'- gUCGUugCAGuggaaggcguacUCGGCCUCG-ACUCGg- -3'
miRNA:   3'- -AGCAugGUU------------AGCUGGAGCuUGGGCau -5'
1523 3' -52.1 NC_001335.1 + 8250 0.69 0.734636
Target:  5'- gUCGUGCCAGaccUCGcCCUCaaGGACCgCGUc -3'
miRNA:   3'- -AGCAUGGUU---AGCuGGAG--CUUGG-GCAu -5'
1523 3' -52.1 NC_001335.1 + 26595 0.69 0.734636
Target:  5'- cCGaGCCGAaCGGCCUUGAGCCgGc- -3'
miRNA:   3'- aGCaUGGUUaGCUGGAGCUUGGgCau -5'
1523 3' -52.1 NC_001335.1 + 7914 0.69 0.701933
Target:  5'- gUCGUuggACU--UCGACCcgUCGAACCCGa- -3'
miRNA:   3'- -AGCA---UGGuuAGCUGG--AGCUUGGGCau -5'
1523 3' -52.1 NC_001335.1 + 119 0.69 0.689765
Target:  5'- cUGUGCCGgccccuaccucugAUCGACUUgGAAaCCCGUAc -3'
miRNA:   3'- aGCAUGGU-------------UAGCUGGAgCUU-GGGCAU- -5'
1523 3' -52.1 NC_001335.1 + 32226 0.7 0.646164
Target:  5'- uUCGaAgUcAUCGACCUCGAAUCCGa- -3'
miRNA:   3'- -AGCaUgGuUAGCUGGAGCUUGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.