miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1525 5' -56.6 NC_001335.1 + 4113 0.66 0.666689
Target:  5'- cGGCAgCGGUugGGgaucuugucggCCUCuUCGGAcUCg -3'
miRNA:   3'- -CCGUgGCCGugCUa----------GGAG-AGCCUaGG- -5'
1525 5' -56.6 NC_001335.1 + 32629 0.66 0.666689
Target:  5'- --gGCCGGCGCgGAUCCaC-CGGAgCCu -3'
miRNA:   3'- ccgUGGCCGUG-CUAGGaGaGCCUaGG- -5'
1525 5' -56.6 NC_001335.1 + 7506 0.66 0.666689
Target:  5'- aGCGCCGGC-CGAcaccccggUCUC-CGaGAUCCc -3'
miRNA:   3'- cCGUGGCCGuGCUa-------GGAGaGC-CUAGG- -5'
1525 5' -56.6 NC_001335.1 + 5544 0.66 0.666689
Target:  5'- cGGUGCCGaGCAgguaGAUggUCUgUCGGAUCUu -3'
miRNA:   3'- -CCGUGGC-CGUg---CUA--GGAgAGCCUAGG- -5'
1525 5' -56.6 NC_001335.1 + 13095 0.66 0.665614
Target:  5'- cGCACCGGCACaccggagGAUCagcUUCGuGAUCg -3'
miRNA:   3'- cCGUGGCCGUG-------CUAGga-GAGC-CUAGg -5'
1525 5' -56.6 NC_001335.1 + 39907 0.66 0.645145
Target:  5'- uGCGgCGaGUACuGAUCaccggaUCUCGGAUCUg -3'
miRNA:   3'- cCGUgGC-CGUG-CUAGg-----AGAGCCUAGG- -5'
1525 5' -56.6 NC_001335.1 + 41667 0.67 0.623556
Target:  5'- uGGgGCCGGCugG--UCUCUCGcgacgaGAUCUa -3'
miRNA:   3'- -CCgUGGCCGugCuaGGAGAGC------CUAGG- -5'
1525 5' -56.6 NC_001335.1 + 41609 0.67 0.623556
Target:  5'- cGGCcCCaGGCGuCGAUCCcCacgUGGAUCUg -3'
miRNA:   3'- -CCGuGG-CCGU-GCUAGGaGa--GCCUAGG- -5'
1525 5' -56.6 NC_001335.1 + 2198 0.67 0.591248
Target:  5'- gGGCGgUGGCGagggucucgaGAUCCUCaacuacgaGGGUCCa -3'
miRNA:   3'- -CCGUgGCCGUg---------CUAGGAGag------CCUAGG- -5'
1525 5' -56.6 NC_001335.1 + 37126 0.67 0.590175
Target:  5'- uGGCGuuGGUgACGGUCUUCacaUCGGcaggaacGUCCa -3'
miRNA:   3'- -CCGUggCCG-UGCUAGGAG---AGCC-------UAGG- -5'
1525 5' -56.6 NC_001335.1 + 23310 0.68 0.574124
Target:  5'- uGCGCCGGUAgGAUCgUugucggugaucgucaCUCGGGUgaCCg -3'
miRNA:   3'- cCGUGGCCGUgCUAGgA---------------GAGCCUA--GG- -5'
1525 5' -56.6 NC_001335.1 + 48814 0.68 0.559236
Target:  5'- cGGCgACCGGaCGCGGUagCUUCUCcGGUCa -3'
miRNA:   3'- -CCG-UGGCC-GUGCUA--GGAGAGcCUAGg -5'
1525 5' -56.6 NC_001335.1 + 9876 0.68 0.559236
Target:  5'- cGGCugUGGCuucgGCGGUgCCguggggCUCGGGgagCCu -3'
miRNA:   3'- -CCGugGCCG----UGCUA-GGa-----GAGCCUa--GG- -5'
1525 5' -56.6 NC_001335.1 + 18097 0.68 0.537116
Target:  5'- cGCACCGGUcgacuucgcgaaaGCGAcuggcaagcaguUCCUUUCGGAcaUCg -3'
miRNA:   3'- cCGUGGCCG-------------UGCU------------AGGAGAGCCU--AGg -5'
1525 5' -56.6 NC_001335.1 + 33754 0.69 0.507092
Target:  5'- cGCAUCGGCGUGggUCaUCUCGGAguugCCu -3'
miRNA:   3'- cCGUGGCCGUGCuaGG-AGAGCCUa---GG- -5'
1525 5' -56.6 NC_001335.1 + 13379 0.69 0.496904
Target:  5'- cGCACCGGUA-GAcCUUCUCGG-UCUc -3'
miRNA:   3'- cCGUGGCCGUgCUaGGAGAGCCuAGG- -5'
1525 5' -56.6 NC_001335.1 + 17146 0.69 0.47681
Target:  5'- cGGCGCUGGCgACGG-CC-CUCGG--CCa -3'
miRNA:   3'- -CCGUGGCCG-UGCUaGGaGAGCCuaGG- -5'
1525 5' -56.6 NC_001335.1 + 6213 0.69 0.47681
Target:  5'- aGGaACCGGUgcaguCGA-CCUCUCGGGUUg -3'
miRNA:   3'- -CCgUGGCCGu----GCUaGGAGAGCCUAGg -5'
1525 5' -56.6 NC_001335.1 + 22754 0.69 0.47681
Target:  5'- uGGCcguCGGCACGGUaguacCCUCggccgcUGGAUCCg -3'
miRNA:   3'- -CCGug-GCCGUGCUA-----GGAGa-----GCCUAGG- -5'
1525 5' -56.6 NC_001335.1 + 28394 0.7 0.419124
Target:  5'- cGCACCGGCgGCGuacaccUCCUCgucguUCGGccAUCCg -3'
miRNA:   3'- cCGUGGCCG-UGCu-----AGGAG-----AGCC--UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.