miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 38471 0.71 0.49836
Target:  5'- --cCGCGcagcccagccaccGCGCGGGCAGCaCCGcGCCCa -3'
miRNA:   3'- gauGCGC-------------CGCGCUUGUCGgGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 28166 0.71 0.499255
Target:  5'- --cCGUGGCGCGuGACGGCCCCcuaCCUg -3'
miRNA:   3'- gauGCGCCGCGC-UUGUCGGGGcc-GGG- -5'
1538 5' -62.1 NC_001347.2 + 156961 0.71 0.499255
Target:  5'- --uCGUGGUgGCGAGCGcGCUCCGGgCCa -3'
miRNA:   3'- gauGCGCCG-CGCUUGU-CGGGGCCgGG- -5'
1538 5' -62.1 NC_001347.2 + 34680 0.7 0.508239
Target:  5'- aCU-CGCGGaCuCGGu--GCCCCGGCCCc -3'
miRNA:   3'- -GAuGCGCC-GcGCUuguCGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 154290 0.7 0.508239
Target:  5'- -gGCGUGGUGCucauGAcgcCGGUgCCGGCCCa -3'
miRNA:   3'- gaUGCGCCGCG----CUu--GUCGgGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 114183 0.7 0.508239
Target:  5'- -gAUGUcGCGCGGACAGCCgCUGaGCUCg -3'
miRNA:   3'- gaUGCGcCGCGCUUGUCGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 17622 0.7 0.517292
Target:  5'- gUAgGCGGCGCGucccACc-CCCCGGgCCa -3'
miRNA:   3'- gAUgCGCCGCGCu---UGucGGGGCCgGG- -5'
1538 5' -62.1 NC_001347.2 + 85295 0.7 0.526408
Target:  5'- ---gGCGGCgGCGAAUcGCCCgGGCUg -3'
miRNA:   3'- gaugCGCCG-CGCUUGuCGGGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 193821 0.7 0.535584
Target:  5'- gCUGCGCacGGCGCGcGAUcuggGGCuCUCGGCCUc -3'
miRNA:   3'- -GAUGCG--CCGCGC-UUG----UCG-GGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 37262 0.7 0.535584
Target:  5'- uUugGCGGCaGCGgagGugGGCCggGGCCCg -3'
miRNA:   3'- gAugCGCCG-CGC---UugUCGGggCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 142592 0.7 0.535584
Target:  5'- -gGgGCGGCGgGGGCAGCggguuauugCCGGCCa -3'
miRNA:   3'- gaUgCGCCGCgCUUGUCGg--------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 169090 0.7 0.542041
Target:  5'- -cACGCGcugccugcucgaaaGCGUGuacACGGCCUCGGCCg -3'
miRNA:   3'- gaUGCGC--------------CGCGCu--UGUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 156638 0.7 0.544816
Target:  5'- ---gGCGGCGCcgcuGCcgGGCCUCGGCCg -3'
miRNA:   3'- gaugCGCCGCGcu--UG--UCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 113870 0.69 0.563427
Target:  5'- -aGCGgGaGCGCGAccgacaacgaagGCuGuCCCUGGCCCu -3'
miRNA:   3'- gaUGCgC-CGCGCU------------UGuC-GGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 13507 0.69 0.563427
Target:  5'- -aACGCcgGGUGCucacccgccGGGCGGCCCgGGCCg -3'
miRNA:   3'- gaUGCG--CCGCG---------CUUGUCGGGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 65173 0.69 0.563427
Target:  5'- aUGCGCGGCuacaGCGAguGCGGCgaUGGCUCg -3'
miRNA:   3'- gAUGCGCCG----CGCU--UGUCGggGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 81560 0.69 0.569982
Target:  5'- -cACGUGGCaGCGGcggcaACAGCCagcgacgaucgccgCCGGCCg -3'
miRNA:   3'- gaUGCGCCG-CGCU-----UGUCGG--------------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 20372 0.69 0.572797
Target:  5'- --cCGCGGCGUGAcCAcGUCaCCGuGCCCc -3'
miRNA:   3'- gauGCGCCGCGCUuGU-CGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 183460 0.69 0.572797
Target:  5'- -----aGGCGCGGAUAgcgcGCCUCGGCCUc -3'
miRNA:   3'- gaugcgCCGCGCUUGU----CGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 78604 0.69 0.582203
Target:  5'- cCU-CGCGGCGCGaggacuccAugAGCCUgGGCgCg -3'
miRNA:   3'- -GAuGCGCCGCGC--------UugUCGGGgCCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.