miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 229932 0.67 0.768175
Target:  5'- cGCUuuuAUUcGCCGUCGCCGUCCuccgcACCAc -3'
miRNA:   3'- cCGG---UAA-CGGCGGCGGCGGGua---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 222759 1.1 0.001554
Target:  5'- cGGCCAUUGCCGCCGCCGCCCAUACCAu -3'
miRNA:   3'- -CCGGUAACGGCGGCGGCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 210145 0.66 0.835686
Target:  5'- cGCCGUcuuucgUGCCGUCGCCGCac-UGCg- -3'
miRNA:   3'- cCGGUA------ACGGCGGCGGCGgguAUGgu -5'
1540 3' -60.2 NC_001347.2 + 209165 0.74 0.398201
Target:  5'- cGGCgGcaGCCGaCCaCCGCCCAUACCu -3'
miRNA:   3'- -CCGgUaaCGGC-GGcGGCGGGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 208818 0.69 0.635656
Target:  5'- aGCCGcUGCgccgCGCCGCCGUCCucgaagcGCCAg -3'
miRNA:   3'- cCGGUaACG----GCGGCGGCGGGua-----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 208213 0.68 0.690819
Target:  5'- cGCCGcUGCUcuuccucagagacgGCCGCCGCCgcUACCGc -3'
miRNA:   3'- cCGGUaACGG--------------CGGCGGCGGguAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 208057 0.69 0.625933
Target:  5'- cGGCguuCGUUGgCGCCGCUGCCgCGUcggguACCGc -3'
miRNA:   3'- -CCG---GUAACgGCGGCGGCGG-GUA-----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 200940 0.67 0.759165
Target:  5'- uGGCCcgUcGaccuuauccccaUCGUCGUCGCCUAUACCGg -3'
miRNA:   3'- -CCGGuaA-C------------GGCGGCGGCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 199615 0.66 0.819674
Target:  5'- cGCCAccGCCGCCGgCGCCguUcUCGg -3'
miRNA:   3'- cCGGUaaCGGCGGCgGCGGguAuGGU- -5'
1540 3' -60.2 NC_001347.2 + 197599 0.69 0.645377
Target:  5'- aGCCGUagaacuuuguagUGCgCGCCGCCGaCUCGcUGCCGc -3'
miRNA:   3'- cCGGUA------------ACG-GCGGCGGC-GGGU-AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 197139 0.72 0.466028
Target:  5'- gGGCCcgccGUCGUCGCCGCCCcgggGCCc -3'
miRNA:   3'- -CCGGuaa-CGGCGGCGGCGGGua--UGGu -5'
1540 3' -60.2 NC_001347.2 + 197102 0.68 0.71275
Target:  5'- cGCCAaccGCUGCCGCCGCaag-GCCc -3'
miRNA:   3'- cCGGUaa-CGGCGGCGGCGgguaUGGu -5'
1540 3' -60.2 NC_001347.2 + 196953 0.69 0.664783
Target:  5'- cGCCGgggcUGUCGCgCGCCGCCgAcGCCc -3'
miRNA:   3'- cCGGUa---ACGGCG-GCGGCGGgUaUGGu -5'
1540 3' -60.2 NC_001347.2 + 196140 0.75 0.329896
Target:  5'- cGGCCGcUGCCuGCCgGCgGCCCuGUGCCGc -3'
miRNA:   3'- -CCGGUaACGG-CGG-CGgCGGG-UAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 195440 0.67 0.768175
Target:  5'- -cCCGUggaucaGCCGCCGCC-UCCAcUGCCAa -3'
miRNA:   3'- ccGGUAa-----CGGCGGCGGcGGGU-AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 194491 0.69 0.655088
Target:  5'- cGCUGUgcugGCCGCCGCUGCacggcaUCAUGCUg -3'
miRNA:   3'- cCGGUAa---CGGCGGCGGCG------GGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 193709 0.66 0.8022
Target:  5'- uGGCUuuccgcgaGUUGCUGgccugcgaggacaCCGCCGCUCGUugCGc -3'
miRNA:   3'- -CCGG--------UAACGGC-------------GGCGGCGGGUAugGU- -5'
1540 3' -60.2 NC_001347.2 + 193649 0.71 0.539364
Target:  5'- gGGCCGagcugUGCCGCCGCucgcgcgccucCGCUCGcgGCCGc -3'
miRNA:   3'- -CCGGUa----ACGGCGGCG-----------GCGGGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 193137 0.68 0.693694
Target:  5'- cGUCGUcGCCGCCGUCGCgCCuu-CCu -3'
miRNA:   3'- cCGGUAaCGGCGGCGGCG-GGuauGGu -5'
1540 3' -60.2 NC_001347.2 + 192120 0.69 0.645377
Target:  5'- uGGUCGccGCCaCCGCCGUCguUGCCGg -3'
miRNA:   3'- -CCGGUaaCGGcGGCGGCGGguAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.