miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 228687 0.76 0.755189
Target:  5'- aGUCGGCGucaaAGUCGCuugcGCUGUCggcccagUCGCCa -3'
miRNA:   3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 226763 0.66 0.997606
Target:  5'- cGUCGGCAugccgcuGAUCGCAGUggccccaccucggcaUGcCggCGCCg -3'
miRNA:   3'- -CGGCUGU-------UUAGCGUCG---------------ACaGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 225525 0.71 0.953497
Target:  5'- gGCgGGCGAAUCGgcCGGCUGg--UCGUCg -3'
miRNA:   3'- -CGgCUGUUUAGC--GUCGACagaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 222796 1.15 0.005214
Target:  5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3'
miRNA:   3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 222411 0.68 0.991687
Target:  5'- gGCCGugGAgaggcGUCGCcGC-GUCUcguUCGUCg -3'
miRNA:   3'- -CGGCugUU-----UAGCGuCGaCAGA---AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 208724 0.67 0.994523
Target:  5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3'
miRNA:   3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 208459 0.67 0.995935
Target:  5'- uGCCGGCGgc-UGCAGUUGUUgucCGCa -3'
miRNA:   3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 208041 0.75 0.810447
Target:  5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3'
miRNA:   3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 202998 0.68 0.992738
Target:  5'- uGCUGACGAAcgCGUcuGGCUGUg--UGCCg -3'
miRNA:   3'- -CGGCUGUUUa-GCG--UCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 198998 0.68 0.992738
Target:  5'- uGCCG-CGAugcCGCAGC--UCUUCGUCc -3'
miRNA:   3'- -CGGCuGUUua-GCGUCGacAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 197624 0.71 0.945092
Target:  5'- cGCCGACucgcugcCGCAGCUG-CUggagCGCg -3'
miRNA:   3'- -CGGCUGuuua---GCGUCGACaGAa---GCGg -5'
1540 5' -51.3 NC_001347.2 + 196887 0.67 0.994523
Target:  5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3'
miRNA:   3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5'
1540 5' -51.3 NC_001347.2 + 196509 0.67 0.993681
Target:  5'- cGCCGACuGGUCGCAgacGCUGaUCgaCGaCUa -3'
miRNA:   3'- -CGGCUGuUUAGCGU---CGAC-AGaaGC-GG- -5'
1540 5' -51.3 NC_001347.2 + 195614 0.7 0.967602
Target:  5'- cGCCGAUucguAAUCGacaggaGGCUGUgcgCGCCg -3'
miRNA:   3'- -CGGCUGu---UUAGCg-----UCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 194468 0.66 0.997483
Target:  5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3'
miRNA:   3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 193081 0.66 0.997483
Target:  5'- uGCCGGCAuguccggccGUCGCaagGGCUGcUCggCgGCCa -3'
miRNA:   3'- -CGGCUGUu--------UAGCG---UCGAC-AGaaG-CGG- -5'
1540 5' -51.3 NC_001347.2 + 192979 0.67 0.99652
Target:  5'- cCCGGCGuucAGUCGCGGCUGag--CGUg -3'
miRNA:   3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5'
1540 5' -51.3 NC_001347.2 + 190772 0.68 0.990518
Target:  5'- -gUGACGGGUUGCGGCUGaa-UCGCa -3'
miRNA:   3'- cgGCUGUUUAGCGUCGACagaAGCGg -5'
1540 5' -51.3 NC_001347.2 + 189698 0.67 0.993681
Target:  5'- cCCGcCAcAUCGCcGCUGUCcaugcuUUCGUCa -3'
miRNA:   3'- cGGCuGUuUAGCGuCGACAG------AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 184215 0.69 0.975968
Target:  5'- uGCCG-CAGggcgGUCGCuAGCgUGUCgcagcgUUCGCCg -3'
miRNA:   3'- -CGGCuGUU----UAGCG-UCG-ACAG------AAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.