miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1544 5' -58.1 NC_001347.2 + 222426 0.66 0.898311
Target:  5'- uCGCCGCGUCucguucgucgaGGCCGAuCGaCUGC-Cg -3'
miRNA:   3'- -GCGGCGCAGua---------CUGGCU-GC-GACGaGa -5'
1544 5' -58.1 NC_001347.2 + 210522 1.08 0.003642
Target:  5'- uCGCCGCGUCAUGACCGACGCUGCUCUg -3'
miRNA:   3'- -GCGGCGCAGUACUGGCUGCGACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 210181 0.7 0.721695
Target:  5'- -cUCGCGUCGUGcCUGACGgUGCUUUc -3'
miRNA:   3'- gcGGCGCAGUACuGGCUGCgACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 208121 0.73 0.556602
Target:  5'- aGCCGCGUCGcucGCCGGCGCUcGUcaUCUg -3'
miRNA:   3'- gCGGCGCAGUac-UGGCUGCGA-CG--AGA- -5'
1544 5' -58.1 NC_001347.2 + 201158 0.67 0.858951
Target:  5'- aCGCCaCGa-GUGACgaCGACGCUGCUUg -3'
miRNA:   3'- -GCGGcGCagUACUG--GCUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 199234 0.66 0.905587
Target:  5'- -aCCGCGUgCGUGAuuauCCGACGCgugagaucgcGCUCg -3'
miRNA:   3'- gcGGCGCA-GUACU----GGCUGCGa---------CGAGa -5'
1544 5' -58.1 NC_001347.2 + 194490 0.66 0.911414
Target:  5'- cCGCUGUG-C-UGGCCGcCGCUGCa-- -3'
miRNA:   3'- -GCGGCGCaGuACUGGCuGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 194045 0.74 0.509281
Target:  5'- uCGUgCGCGUgG-GGCUGGCGCUGCUCa -3'
miRNA:   3'- -GCG-GCGCAgUaCUGGCUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 193185 0.67 0.8515
Target:  5'- gGCCGCGUC---GCaaACGCUGCUUg -3'
miRNA:   3'- gCGGCGCAGuacUGgcUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 193070 0.68 0.819935
Target:  5'- uCGUCGCGgacugccggCAUGuCCGGCcgucgcaaggGCUGCUCg -3'
miRNA:   3'- -GCGGCGCa--------GUACuGGCUG----------CGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 192650 0.66 0.893291
Target:  5'- aCGCUGCGUCGguuucUGcgcGgCGACaGCUGCUUUg -3'
miRNA:   3'- -GCGGCGCAGU-----AC---UgGCUG-CGACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 182292 0.71 0.683294
Target:  5'- uGCgGCGUCGUuGCCGggGCGgCUGCUCc -3'
miRNA:   3'- gCGgCGCAGUAcUGGC--UGC-GACGAGa -5'
1544 5' -58.1 NC_001347.2 + 174429 0.69 0.76805
Target:  5'- uCGUCGCGUCAgcGGCaCGGUGCUGCgUCUc -3'
miRNA:   3'- -GCGGCGCAGUa-CUG-GCUGCGACG-AGA- -5'
1544 5' -58.1 NC_001347.2 + 173120 0.68 0.811636
Target:  5'- -uCgGCGUgGUGGCCGAC-CUGCUUa -3'
miRNA:   3'- gcGgCGCAgUACUGGCUGcGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 169196 0.72 0.595343
Target:  5'- gGCUGCGUCAaGACCGucuCGCUGggCa -3'
miRNA:   3'- gCGGCGCAGUaCUGGCu--GCGACgaGa -5'
1544 5' -58.1 NC_001347.2 + 167423 0.7 0.740505
Target:  5'- aGCCGa-UCAacgugGAUCGAUGCUGCUCc -3'
miRNA:   3'- gCGGCgcAGUa----CUGGCUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 161528 0.68 0.811636
Target:  5'- uCGCCuaGCGUC-UGACCcaaGCGCUGCa-- -3'
miRNA:   3'- -GCGG--CGCAGuACUGGc--UGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 158994 0.66 0.899545
Target:  5'- aGCCGUGUCGcGcacCCGGCGCUGaCa-- -3'
miRNA:   3'- gCGGCGCAGUaCu--GGCUGCGAC-Gaga -5'
1544 5' -58.1 NC_001347.2 + 156990 0.68 0.836057
Target:  5'- gCGaCCGCaGUCugGGCCGugGCUGCcCg -3'
miRNA:   3'- -GC-GGCG-CAGuaCUGGCugCGACGaGa -5'
1544 5' -58.1 NC_001347.2 + 153267 0.67 0.866214
Target:  5'- uCGCCGUGguuguUGGCCGACGUaGCg-- -3'
miRNA:   3'- -GCGGCGCagu--ACUGGCUGCGaCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.