miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1548 3' -44.9 NC_001347.2 + 29301 0.67 0.999999
Target:  5'- uGGCUcCGGGACUAUCGUgUUCCc--- -3'
miRNA:   3'- -CCGAuGUUUUGAUGGCAaAAGGcacc -5'
1548 3' -44.9 NC_001347.2 + 140330 0.67 0.999999
Target:  5'- gGGCUGCGccGCgggGCUGUgcgaggcCUGUGGg -3'
miRNA:   3'- -CCGAUGUuuUGa--UGGCAaaa----GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 184984 0.66 1
Target:  5'- gGGCUGCAGGcggcagcggauACUgGCCGUgacuugcuggaUCuCGUGGg -3'
miRNA:   3'- -CCGAUGUUU-----------UGA-UGGCAaa---------AG-GCACC- -5'
1548 3' -44.9 NC_001347.2 + 126662 0.66 1
Target:  5'- cGGUUGCucGAgUACCGg---CgCGUGGu -3'
miRNA:   3'- -CCGAUGuuUUgAUGGCaaaaG-GCACC- -5'
1548 3' -44.9 NC_001347.2 + 101508 0.66 1
Target:  5'- uGCUacGCAAGGCgccGCCGUacUuuGUGGu -3'
miRNA:   3'- cCGA--UGUUUUGa--UGGCAaaAggCACC- -5'
1548 3' -44.9 NC_001347.2 + 92237 0.66 1
Target:  5'- aGCUGCAAcccgcCUGCCcgcaggCCGUGGc -3'
miRNA:   3'- cCGAUGUUuu---GAUGGcaaaa-GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 93819 0.67 1
Target:  5'- aGGUUACuGAAuCUGCCGUcg-CCGUucgcGGa -3'
miRNA:   3'- -CCGAUGuUUU-GAUGGCAaaaGGCA----CC- -5'
1548 3' -44.9 NC_001347.2 + 24589 0.67 1
Target:  5'- cGCUcaGCGAAaccggcacccgcGCUGCCGUcgUCCGUu- -3'
miRNA:   3'- cCGA--UGUUU------------UGAUGGCAaaAGGCAcc -5'
1548 3' -44.9 NC_001347.2 + 100537 0.67 1
Target:  5'- cGGCccgcgACAAAACUGCgucguagguaccagaUGUUcaCCGUGGc -3'
miRNA:   3'- -CCGa----UGUUUUGAUG---------------GCAAaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 14514 0.67 1
Target:  5'- aGGCggcguCAAAGCUcaucuguugccgcgaGCCGUUgacgCCGUuGGg -3'
miRNA:   3'- -CCGau---GUUUUGA---------------UGGCAAaa--GGCA-CC- -5'
1548 3' -44.9 NC_001347.2 + 59801 0.67 1
Target:  5'- -uCUACGAGACgGCCGcgaaggccuacgCCGUGGg -3'
miRNA:   3'- ccGAUGUUUUGaUGGCaaaa--------GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 149558 0.67 1
Target:  5'- uGCUACGAGACggggggaaacACCG----CCGUGGa -3'
miRNA:   3'- cCGAUGUUUUGa---------UGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 6206 0.66 1
Target:  5'- cGGCgGCGAAACaaccagcGCCGggUaCUGUGGc -3'
miRNA:   3'- -CCGaUGUUUUGa------UGGCaaAaGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.