miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 76720 0.66 0.992835
Target:  5'- cAGAucguUGAucugcaGGCGCUGgaugguggucuccucGUGCGGCuCGCa -3'
miRNA:   3'- -UCUuuu-ACU------UCGCGAU---------------CGCGCCG-GCG- -5'
1553 5' -52.8 NC_001347.2 + 168799 0.66 0.992431
Target:  5'- ----cAUGGAcGCGCgcGCGguggccaaaCGGCCGCg -3'
miRNA:   3'- ucuuuUACUU-CGCGauCGC---------GCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 178533 0.66 0.992431
Target:  5'- cGAAAAgcAGGUGCUggaAGCGC-GUCGCg -3'
miRNA:   3'- uCUUUUacUUCGCGA---UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 172064 0.66 0.992431
Target:  5'- ------gGAAGCGCU-GCGC-GCCGa -3'
miRNA:   3'- ucuuuuaCUUCGCGAuCGCGcCGGCg -5'
1553 5' -52.8 NC_001347.2 + 140675 0.66 0.992431
Target:  5'- gGGAAuGAUGggGCGCg---GCGGUCGn -3'
miRNA:   3'- -UCUU-UUACuuCGCGaucgCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 208843 0.66 0.992431
Target:  5'- ------cGAAGCGCcAGCGCccGCCGg -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCGCGc-CGGCg -5'
1553 5' -52.8 NC_001347.2 + 184735 0.66 0.992328
Target:  5'- gAGGAcGUGGcacaguucgcgguGGCGCUcGUGUGGCaGCa -3'
miRNA:   3'- -UCUUuUACU-------------UCGCGAuCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 199877 0.66 0.99201
Target:  5'- cAGAucuuccguGGCGCU-GCGCGcCCGCg -3'
miRNA:   3'- -UCUuuuacu--UCGCGAuCGCGCcGGCG- -5'
1553 5' -52.8 NC_001347.2 + 59045 0.66 0.991793
Target:  5'- gAGGAGcauccGUGAccucgagccaccaugGGCGCggcgguuuuggUGGCGCGGCCu- -3'
miRNA:   3'- -UCUUU-----UACU---------------UCGCG-----------AUCGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 139470 0.66 0.991344
Target:  5'- ------cGAGGCGgU-GCGCGuGCCGUu -3'
miRNA:   3'- ucuuuuaCUUCGCgAuCGCGC-CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 148597 0.66 0.991344
Target:  5'- -uGAGcgGcGGCGUgaccggcGGUGCGGUCGCg -3'
miRNA:   3'- ucUUUuaCuUCGCGa------UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 161726 0.66 0.991344
Target:  5'- cGAuu-UGAuGCGCUAGCGUcacGG-CGCu -3'
miRNA:   3'- uCUuuuACUuCGCGAUCGCG---CCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 149885 0.66 0.991344
Target:  5'- --------cGGCGC-AGgGCGGCCGUu -3'
miRNA:   3'- ucuuuuacuUCGCGaUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 2447 0.66 0.991344
Target:  5'- uGGGAGcgGccGCGCUGGgaCGC-GCUGCa -3'
miRNA:   3'- -UCUUUuaCuuCGCGAUC--GCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 166769 0.66 0.990136
Target:  5'- ------cGGAGCGCgccaugAGCuCGGCCaGCa -3'
miRNA:   3'- ucuuuuaCUUCGCGa-----UCGcGCCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 139320 0.66 0.990136
Target:  5'- cGAucugGcGGCGUUGuGCGCGGCgGUg -3'
miRNA:   3'- uCUuuuaCuUCGCGAU-CGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 229042 0.66 0.990136
Target:  5'- --uGGGUGAAGCgGCgUGGUGUGGgUGCu -3'
miRNA:   3'- ucuUUUACUUCG-CG-AUCGCGCCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 81376 0.66 0.990136
Target:  5'- uAGGGAuUGAAGuCGCgcGCGCguacacacuuGGCCaGCa -3'
miRNA:   3'- -UCUUUuACUUC-GCGauCGCG----------CCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 152794 0.66 0.988801
Target:  5'- cGAAGAUGAcGUGCauGUGCaaccGGCCGUc -3'
miRNA:   3'- uCUUUUACUuCGCGauCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 141803 0.66 0.988801
Target:  5'- uGAAGAccGcAGGCGUgccGGCGCccauGGCCGCc -3'
miRNA:   3'- uCUUUUa-C-UUCGCGa--UCGCG----CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.