Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1555 | 5' | -61.4 | NC_001347.2 | + | 76633 | 0.71 | 0.482603 |
Target: 5'- gGCCGCGgcgGAGGCCGaaGCGGCcuuGCGc -3' miRNA: 3'- gCGGUGUa--CUUCGGCgcCGCCG---CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 78426 | 0.71 | 0.491567 |
Target: 5'- cCGCCACcc--GGCC-CGGCGGCGCc- -3' miRNA: 3'- -GCGGUGuacuUCGGcGCCGCCGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 142981 | 0.71 | 0.500607 |
Target: 5'- uCGCCcgagGCGgaGGAGCCgGCGGCGGCG-GUg -3' miRNA: 3'- -GCGG----UGUa-CUUCGG-CGCCGCCGCgCA- -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 192021 | 0.71 | 0.500607 |
Target: 5'- aGCUcCGUGAAGCUGaCGaGCGGCaGCGg -3' miRNA: 3'- gCGGuGUACUUCGGC-GC-CGCCG-CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 59065 | 0.71 | 0.500607 |
Target: 5'- aGCCAcCAUGGGcGCgGCGGUuuugguGGCGCGg -3' miRNA: 3'- gCGGU-GUACUU-CGgCGCCG------CCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 79049 | 0.71 | 0.50972 |
Target: 5'- aGCCGCGaGAAGgCGCGuCGGCGCc- -3' miRNA: 3'- gCGGUGUaCUUCgGCGCcGCCGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 86263 | 0.71 | 0.50972 |
Target: 5'- uCGgCGCGcGAAGCUuCGGCGGCGUGc -3' miRNA: 3'- -GCgGUGUaCUUCGGcGCCGCCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 16852 | 0.7 | 0.516141 |
Target: 5'- aCGCaACG-GAGGCUGCguacacaugggcgaGGCGGCGCGUc -3' miRNA: 3'- -GCGgUGUaCUUCGGCG--------------CCGCCGCGCA- -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 38414 | 0.7 | 0.518902 |
Target: 5'- uGCCGCuc---GCCGCuGGCGGCGaCGUc -3' miRNA: 3'- gCGGUGuacuuCGGCG-CCGCCGC-GCA- -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 173651 | 0.7 | 0.528149 |
Target: 5'- gCGUCugGgagGAGGUgGCGGCGGUgGCGg -3' miRNA: 3'- -GCGGugUa--CUUCGgCGCCGCCG-CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 153850 | 0.7 | 0.528149 |
Target: 5'- gCGCCACGUccucguguGCCGCGccgaGCGGCGaCGUg -3' miRNA: 3'- -GCGGUGUAcuu-----CGGCGC----CGCCGC-GCA- -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 82578 | 0.7 | 0.537456 |
Target: 5'- cCGCgCACcacgaacguGUGAAGCCGCGGCucGGCaCGg -3' miRNA: 3'- -GCG-GUG---------UACUUCGGCGCCG--CCGcGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 139661 | 0.7 | 0.546819 |
Target: 5'- aGCCGCGUGu-GCUGaucgaGGCGGCGUu- -3' miRNA: 3'- gCGGUGUACuuCGGCg----CCGCCGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 228722 | 0.7 | 0.555289 |
Target: 5'- uCGCCACc----GCCGCGGCGgauuuccGCGCGg -3' miRNA: 3'- -GCGGUGuacuuCGGCGCCGC-------CGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 38010 | 0.7 | 0.565693 |
Target: 5'- cCGCCGCGc--GGCCuCGGCGGCGgGc -3' miRNA: 3'- -GCGGUGUacuUCGGcGCCGCCGCgCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 165547 | 0.7 | 0.565693 |
Target: 5'- gGCCGCGaGAgcgcgugcacgguccGGCCGaaccgcgacuccaGGCGGCGCGg -3' miRNA: 3'- gCGGUGUaCU---------------UCGGCg------------CCGCCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 156620 | 0.7 | 0.565693 |
Target: 5'- -cCCAcCAUGGucGCCGCuGGCGGCGCc- -3' miRNA: 3'- gcGGU-GUACUu-CGGCG-CCGCCGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 98032 | 0.69 | 0.575195 |
Target: 5'- aCGCUccuCcgGAcgaaacGCCGCGGCGGCaGCGg -3' miRNA: 3'- -GCGGu--GuaCUu-----CGGCGCCGCCG-CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 141823 | 0.69 | 0.584732 |
Target: 5'- gCGCC-CAUG--GCCGCcacuGUGGCGCGUg -3' miRNA: 3'- -GCGGuGUACuuCGGCGc---CGCCGCGCA- -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 112979 | 0.69 | 0.592384 |
Target: 5'- uGCCACGguagcaccuggaGGAGCCGUaGCGGCGgGa -3' miRNA: 3'- gCGGUGUa-----------CUUCGGCGcCGCCGCgCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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