miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 228722 0.7 0.555289
Target:  5'- uCGCCACc----GCCGCGGCGgauuuccGCGCGg -3'
miRNA:   3'- -GCGGUGuacuuCGGCGCCGC-------CGCGCa -5'
1555 5' -61.4 NC_001347.2 + 200165 0.67 0.734343
Target:  5'- uCGCCACGcu-GGCCGCGGUgaggacaagaagacGGaGCGUg -3'
miRNA:   3'- -GCGGUGUacuUCGGCGCCG--------------CCgCGCA- -5'
1555 5' -61.4 NC_001347.2 + 198113 0.68 0.671201
Target:  5'- uCGUCGCGuUGAGGauagucgCGCGGUGGCaGCGg -3'
miRNA:   3'- -GCGGUGU-ACUUCg------GCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 197556 0.69 0.613503
Target:  5'- gGCCgGCGUGGcGGCCGaCGGCaGCGUGc -3'
miRNA:   3'- gCGG-UGUACU-UCGGC-GCCGcCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 197248 1.07 0.002131
Target:  5'- aCGCCACAUGAAGCCGCGGCGGCGCGUu -3'
miRNA:   3'- -GCGGUGUACUUCGGCGCCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 193992 0.68 0.632756
Target:  5'- gGCgCugGUGggGCaggauaaguuggUGCGGCuGGCGCGc -3'
miRNA:   3'- gCG-GugUACuuCG------------GCGCCG-CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 192975 0.67 0.709193
Target:  5'- gCGCCccgGCGUucAGUCGCGGCuGaGCGUGUg -3'
miRNA:   3'- -GCGG---UGUAcuUCGGCGCCG-C-CGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 192175 0.67 0.690283
Target:  5'- cCGCCGucuCcgGAugAGCgGCcGCGGCGCGg -3'
miRNA:   3'- -GCGGU---GuaCU--UCGgCGcCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 192021 0.71 0.500607
Target:  5'- aGCUcCGUGAAGCUGaCGaGCGGCaGCGg -3'
miRNA:   3'- gCGGuGUACUUCGGC-GC-CGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 191980 0.67 0.727872
Target:  5'- cCGCCACc----GCaGCGGCGGCGaCGg -3'
miRNA:   3'- -GCGGUGuacuuCGgCGCCGCCGC-GCa -5'
1555 5' -61.4 NC_001347.2 + 187351 0.66 0.746258
Target:  5'- gCGUUGCGUG--GCCGUGGCGcGuCGCGg -3'
miRNA:   3'- -GCGGUGUACuuCGGCGCCGC-C-GCGCa -5'
1555 5' -61.4 NC_001347.2 + 185540 0.67 0.690283
Target:  5'- aCGCCACGcGAuuGGCCGuCGGCGucCGCa- -3'
miRNA:   3'- -GCGGUGUaCU--UCGGC-GCCGCc-GCGca -5'
1555 5' -61.4 NC_001347.2 + 184728 0.67 0.699763
Target:  5'- aGCCG-AUGAGGacguggcacaguUCGCGGUGGCGCu- -3'
miRNA:   3'- gCGGUgUACUUC------------GGCGCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 182292 0.66 0.781906
Target:  5'- uGCgGCGUcGuuGCCGgGGCGGCuGCu- -3'
miRNA:   3'- gCGgUGUA-CuuCGGCgCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 173979 0.66 0.773154
Target:  5'- gGCCGCGUGccuGGgaaCGCGcGCacGGCGCGg -3'
miRNA:   3'- gCGGUGUACu--UCg--GCGC-CG--CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 173718 0.67 0.690283
Target:  5'- aCGCgGaaaAUGAgcAGCgGUGGCGGCgGCGg -3'
miRNA:   3'- -GCGgUg--UACU--UCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 173651 0.7 0.528149
Target:  5'- gCGUCugGgagGAGGUgGCGGCGGUgGCGg -3'
miRNA:   3'- -GCGGugUa--CUUCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 173534 0.71 0.464917
Target:  5'- aGUCGCGUGGcGGCgGCGGUGGUgGCGg -3'
miRNA:   3'- gCGGUGUACU-UCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 171910 0.67 0.727872
Target:  5'- aG-CACAUGuacuuuGCCGCGGUGcGCGCu- -3'
miRNA:   3'- gCgGUGUACuu----CGGCGCCGC-CGCGca -5'
1555 5' -61.4 NC_001347.2 + 170151 0.69 0.603892
Target:  5'- cCGCC--GUGcccAGUCGCGGUGGaCGCGUg -3'
miRNA:   3'- -GCGGugUACu--UCGGCGCCGCC-GCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.