miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15658 5' -55.7 NC_004065.1 + 1427 0.66 0.938985
Target:  5'- -gGCAGCGGCGCCgaCgacacaauGGGGACc- -3'
miRNA:   3'- uaCGUUGUCGCGGgaGau------CUCCUGuu -5'
15658 5' -55.7 NC_004065.1 + 22482 0.66 0.938985
Target:  5'- uUGUAGuCGaCGUCCUUUGGAGGGCGu -3'
miRNA:   3'- uACGUU-GUcGCGGGAGAUCUCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 191280 0.66 0.934087
Target:  5'- aGUGCAcuuCGGgGCCCUCUcuGAGGcggaGCAGg -3'
miRNA:   3'- -UACGUu--GUCgCGGGAGAu-CUCC----UGUU- -5'
15658 5' -55.7 NC_004065.1 + 39619 0.66 0.934087
Target:  5'- aGUGCuACcGgGCCCUCcgAGGGGAgGAg -3'
miRNA:   3'- -UACGuUGuCgCGGGAGa-UCUCCUgUU- -5'
15658 5' -55.7 NC_004065.1 + 23046 0.66 0.934086
Target:  5'- -aGCGACGGUGgCCggucguGAGGACGAc -3'
miRNA:   3'- uaCGUUGUCGCgGGagau--CUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 122590 0.66 0.923564
Target:  5'- cGUGCGGaAGCugGCCCU--GGAGGACAGc -3'
miRNA:   3'- -UACGUUgUCG--CGGGAgaUCUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 41372 0.66 0.923564
Target:  5'- -cGCcGC-GCGCCCUCgAGcGGACAu -3'
miRNA:   3'- uaCGuUGuCGCGGGAGaUCuCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 124959 0.66 0.91794
Target:  5'- -cGCGGCAGCGCCUgcacgaAGGGCGg -3'
miRNA:   3'- uaCGUUGUCGCGGGagauc-UCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 199806 0.66 0.91794
Target:  5'- -cGCGGCAcgauggggcGCGCCCggCUGGAGG-CGc -3'
miRNA:   3'- uaCGUUGU---------CGCGGGa-GAUCUCCuGUu -5'
15658 5' -55.7 NC_004065.1 + 99374 0.66 0.912074
Target:  5'- -aGCGACGGCGCCgaCUGucccgacucGAGcGACAGg -3'
miRNA:   3'- uaCGUUGUCGCGGgaGAU---------CUC-CUGUU- -5'
15658 5' -55.7 NC_004065.1 + 115060 0.67 0.905969
Target:  5'- -gGCAACGGCGCgCgc--GAGGACGc -3'
miRNA:   3'- uaCGUUGUCGCGgGagauCUCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 89705 0.67 0.905969
Target:  5'- -cGCAgaGCAGCGUCUUCUucaAGaAGGGCGc -3'
miRNA:   3'- uaCGU--UGUCGCGGGAGA---UC-UCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 27774 0.67 0.905969
Target:  5'- -cGCuGCGcCGCCgUCUGGAGGGCc- -3'
miRNA:   3'- uaCGuUGUcGCGGgAGAUCUCCUGuu -5'
15658 5' -55.7 NC_004065.1 + 47 0.67 0.905969
Target:  5'- gAUGgGGgGGCuauauuuuuGUCCUCUAGAGGGCGc -3'
miRNA:   3'- -UACgUUgUCG---------CGGGAGAUCUCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 68348 0.67 0.899626
Target:  5'- cUGCAGCAGCuGCCCg-UGGAGaACAc -3'
miRNA:   3'- uACGUUGUCG-CGGGagAUCUCcUGUu -5'
15658 5' -55.7 NC_004065.1 + 26423 0.67 0.899626
Target:  5'- -gGCGGCGGCGgCCUCcgAGAGcACAu -3'
miRNA:   3'- uaCGUUGUCGCgGGAGa-UCUCcUGUu -5'
15658 5' -55.7 NC_004065.1 + 19581 0.67 0.899625
Target:  5'- gAUGUAGCGuGCGUCCUCcgGGuAGGAUGAc -3'
miRNA:   3'- -UACGUUGU-CGCGGGAGa-UC-UCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 127778 0.67 0.893048
Target:  5'- -gGCGACGGgGCCCaugagcaggCggcAGAGGACGAc -3'
miRNA:   3'- uaCGUUGUCgCGGGa--------Ga--UCUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 221906 0.68 0.864463
Target:  5'- --uCGACGGCGCCCggcUCUGGGGcGACu- -3'
miRNA:   3'- uacGUUGUCGCGGG---AGAUCUC-CUGuu -5'
15658 5' -55.7 NC_004065.1 + 217091 0.68 0.856773
Target:  5'- --aCAGCGGCGUCCgUCUcuguAGAGGAUAAu -3'
miRNA:   3'- uacGUUGUCGCGGG-AGA----UCUCCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.