miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15661 5' -55.6 NC_004065.1 + 41621 0.66 0.974619
Target:  5'- cCGCUCGAGGGcGCGCg-GCgggagacgACGGUc -3'
miRNA:   3'- -GCGAGCUCCU-UGCGagCGaag-----UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 33398 0.66 0.974619
Target:  5'- -uCUCGAGG--CGCUCGCcc--CGGCg -3'
miRNA:   3'- gcGAGCUCCuuGCGAGCGaaguGCCG- -5'
15661 5' -55.6 NC_004065.1 + 67262 0.66 0.974619
Target:  5'- cCGCgCGGGGcccguacacgGGCGC-CGaCUggUCACGGCu -3'
miRNA:   3'- -GCGaGCUCC----------UUGCGaGC-GA--AGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 108649 0.66 0.973858
Target:  5'- uGCcccCGAGGAugGCguugagCGCgucgucguccucgaaCACGGCa -3'
miRNA:   3'- gCGa--GCUCCUugCGa-----GCGaa-------------GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 109808 0.66 0.972018
Target:  5'- aCGUUCGAcGaGAACGCccucgUCGCcgUCcugcuGCGGCg -3'
miRNA:   3'- -GCGAGCU-C-CUUGCG-----AGCGa-AG-----UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 63503 0.66 0.972018
Target:  5'- aGCcaggUGcGGAugGcCUCGCccUCGCGGCc -3'
miRNA:   3'- gCGa---GCuCCUugC-GAGCGa-AGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 197328 0.66 0.972018
Target:  5'- cCGCUaCGAGGAACugaaagGCgUCGaCaUCaACGGCa -3'
miRNA:   3'- -GCGA-GCUCCUUG------CG-AGC-GaAG-UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 41189 0.66 0.972018
Target:  5'- gGCUCGAGGAccuCGCcCGgUgucucugugcUCAgGGCc -3'
miRNA:   3'- gCGAGCUCCUu--GCGaGCgA----------AGUgCCG- -5'
15661 5' -55.6 NC_004065.1 + 223815 0.66 0.972018
Target:  5'- uGCgaGAGGGucuCGCUCGCguugUCGCGaaccGCa -3'
miRNA:   3'- gCGagCUCCUu--GCGAGCGa---AGUGC----CG- -5'
15661 5' -55.6 NC_004065.1 + 31255 0.66 0.972018
Target:  5'- aGCUCGAacaGugGCUCaGCgcccgaCGCGGCg -3'
miRNA:   3'- gCGAGCUcc-UugCGAG-CGaa----GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 24214 0.66 0.970368
Target:  5'- aCGCgguuggCGAGGuuuCGCUCGCgccaggacaggaugUCguuguugguGCGGCa -3'
miRNA:   3'- -GCGa-----GCUCCuu-GCGAGCGa-------------AG---------UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 52823 0.66 0.96923
Target:  5'- uGCUCu-GGAgaugcagaugauGCGCUCGgCgggggcgCACGGCg -3'
miRNA:   3'- gCGAGcuCCU------------UGCGAGC-Gaa-----GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 170725 0.66 0.96923
Target:  5'- aGCUCGccGAGCGgUCuGCg--GCGGCa -3'
miRNA:   3'- gCGAGCucCUUGCgAG-CGaagUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 56120 0.66 0.96923
Target:  5'- cCGgaCGAcGGcGGCGCUCGCcUUCugcagccuCGGCg -3'
miRNA:   3'- -GCgaGCU-CC-UUGCGAGCG-AAGu-------GCCG- -5'
15661 5' -55.6 NC_004065.1 + 201380 0.66 0.96923
Target:  5'- uCGC-CGGGGggUGCcacgucgaCGCacagaugcgUCGCGGCg -3'
miRNA:   3'- -GCGaGCUCCuuGCGa-------GCGa--------AGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 92041 0.66 0.96923
Target:  5'- gGCUCuuGGcGCGCUCGaggcaucUCACGcGCg -3'
miRNA:   3'- gCGAGcuCCuUGCGAGCga-----AGUGC-CG- -5'
15661 5' -55.6 NC_004065.1 + 100769 0.66 0.96625
Target:  5'- aGCUgUGGGGcGgGCUCaGCUUCgcGCGGUg -3'
miRNA:   3'- gCGA-GCUCCuUgCGAG-CGAAG--UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 88919 0.66 0.96625
Target:  5'- cCGCUCGcGGGugcuggcgGCGCUCGaCUcgACGGg -3'
miRNA:   3'- -GCGAGCuCCU--------UGCGAGC-GAagUGCCg -5'
15661 5' -55.6 NC_004065.1 + 41437 0.66 0.963072
Target:  5'- gGCUCGAGauGGACG-UC-CUUUugGGCc -3'
miRNA:   3'- gCGAGCUC--CUUGCgAGcGAAGugCCG- -5'
15661 5' -55.6 NC_004065.1 + 153889 0.66 0.963072
Target:  5'- uGUUCGuGGGGAccCGCUgGCggUCugGGUa -3'
miRNA:   3'- gCGAGC-UCCUU--GCGAgCGa-AGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.