miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 141281 0.66 0.995749
Target:  5'- aCCGGACACUgcguCGUGGUCuuccagcagaccaagACCGUCAg -3'
miRNA:   3'- -GGCCUGUGGuu--GUGCUAG---------------UGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 64308 0.66 0.99549
Target:  5'- cUCGGACAuCCAACAgGGUCugCu---- -3'
miRNA:   3'- -GGCCUGU-GGUUGUgCUAGugGcagug -5'
15662 3' -52.9 NC_004065.1 + 22236 0.66 0.99549
Target:  5'- -gGcGugGCCGugGCGGcccUCACCGUCc- -3'
miRNA:   3'- ggC-CugUGGUugUGCU---AGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 229783 0.66 0.99549
Target:  5'- gCCGGACgaagGCCAACuCGuuaACCGagCACa -3'
miRNA:   3'- -GGCCUG----UGGUUGuGCuagUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 90363 0.66 0.99549
Target:  5'- gCCGGcgGCGCCAGCGgGuugaacuucGUCuCCGUCGa -3'
miRNA:   3'- -GGCC--UGUGGUUGUgC---------UAGuGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 45845 0.66 0.99549
Target:  5'- aCCGGcCGCacggGACGCGAUgGCCGcUC-Cg -3'
miRNA:   3'- -GGCCuGUGg---UUGUGCUAgUGGC-AGuG- -5'
15662 3' -52.9 NC_004065.1 + 70050 0.66 0.99549
Target:  5'- aCGGugGagaCGGcCACGAUCGCCG-CGa -3'
miRNA:   3'- gGCCugUg--GUU-GUGCUAGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 13456 0.66 0.99549
Target:  5'- gCGGAgAUaugGCAUGAUC-CCGUUACc -3'
miRNA:   3'- gGCCUgUGgu-UGUGCUAGuGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 41983 0.66 0.99549
Target:  5'- aUCGGccCGCCGAUcaggAUGAUCACCGUg-- -3'
miRNA:   3'- -GGCCu-GUGGUUG----UGCUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 70089 0.66 0.99549
Target:  5'- gCGGACcCCGAgGCGAcgagcagCACCGgcaGCg -3'
miRNA:   3'- gGCCUGuGGUUgUGCUa------GUGGCag-UG- -5'
15662 3' -52.9 NC_004065.1 + 131329 0.66 0.99549
Target:  5'- gCUGGGCGuccCCAugACgGGUC-CCGUCGa -3'
miRNA:   3'- -GGCCUGU---GGUugUG-CUAGuGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 146545 0.66 0.99549
Target:  5'- gUCGGccuGC-CCGACAUcGUCGgCGUCGCg -3'
miRNA:   3'- -GGCC---UGuGGUUGUGcUAGUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 63969 0.66 0.99549
Target:  5'- aCGG-CGCCGACcaccagGCGAUCACgGccCGCu -3'
miRNA:   3'- gGCCuGUGGUUG------UGCUAGUGgCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 228766 0.66 0.99549
Target:  5'- cCUGGACcucaugACgGACGCGGgaacCGCCGgagCACa -3'
miRNA:   3'- -GGCCUG------UGgUUGUGCUa---GUGGCa--GUG- -5'
15662 3' -52.9 NC_004065.1 + 69868 0.66 0.995423
Target:  5'- gCGGucguauuccaccuGCACCcg-GCGGUaCACCGUCGCc -3'
miRNA:   3'- gGCC-------------UGUGGuugUGCUA-GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 135720 0.66 0.995287
Target:  5'- gCCGGugACCuccugggcguacgaGAUGCGAauggCGuuGUCGCa -3'
miRNA:   3'- -GGCCugUGG--------------UUGUGCUa---GUggCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 109321 0.66 0.995218
Target:  5'- cCCGGACAgCAGCuguuccgccugauCGAUC-CUGcCGCg -3'
miRNA:   3'- -GGCCUGUgGUUGu------------GCUAGuGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 97488 0.66 0.994785
Target:  5'- cCCGGAgUGCCGcaGCGAUCugCGgcggaUCACc -3'
miRNA:   3'- -GGCCU-GUGGUugUGCUAGugGC-----AGUG- -5'
15662 3' -52.9 NC_004065.1 + 21996 0.66 0.994785
Target:  5'- aCGGccACGCCG--ACGGUCAUCGcCGCc -3'
miRNA:   3'- gGCC--UGUGGUugUGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 56386 0.66 0.994785
Target:  5'- gCCGaGGCugCAGaagGCGAgcgcCGCCGUCGu -3'
miRNA:   3'- -GGC-CUGugGUUg--UGCUa---GUGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.