miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15663 5' -54.6 NC_004065.1 + 185337 0.66 0.968093
Target:  5'- aGAUGAGCAGGAaaacguuuuagaGCUGCUUUucaaCAGGAGu -3'
miRNA:   3'- -UUGCUUGUCCU------------CGACGGAGc---GUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 33728 0.66 0.961554
Target:  5'- uGGCG-ACGGuGGCUcggcccagcGCCUUGCAGGAGu -3'
miRNA:   3'- -UUGCuUGUCcUCGA---------CGGAGCGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 222723 0.66 0.960499
Target:  5'- -uCGAucguCAGGAGCU-CCUCGCccgggacccaacguAGGAGg -3'
miRNA:   3'- uuGCUu---GUCCUCGAcGGAGCG--------------UUCUC- -5'
15663 5' -54.6 NC_004065.1 + 125587 0.66 0.957959
Target:  5'- aGGCGAcgcuGCAGGuGCUgcggGCCUCGCugacGGAc -3'
miRNA:   3'- -UUGCU----UGUCCuCGA----CGGAGCGu---UCUc -5'
15663 5' -54.6 NC_004065.1 + 62472 0.67 0.95414
Target:  5'- cGGCGAcgGCAGGAGCgGCCgcggCGguAGc- -3'
miRNA:   3'- -UUGCU--UGUCCUCGaCGGa---GCguUCuc -5'
15663 5' -54.6 NC_004065.1 + 70525 0.67 0.950094
Target:  5'- cGACGGagcuGCAGGcGC-GCCUgcaggCGCGAGAGa -3'
miRNA:   3'- -UUGCU----UGUCCuCGaCGGA-----GCGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 32871 0.67 0.950094
Target:  5'- cGAUGGACAGGucgcGCU-CCUCGUccGAGa -3'
miRNA:   3'- -UUGCUUGUCCu---CGAcGGAGCGuuCUC- -5'
15663 5' -54.6 NC_004065.1 + 121159 0.67 0.945816
Target:  5'- uACGGacuGCGGGuGCUGUCgcCGCGAGAc -3'
miRNA:   3'- uUGCU---UGUCCuCGACGGa-GCGUUCUc -5'
15663 5' -54.6 NC_004065.1 + 154228 0.67 0.941305
Target:  5'- gAACGggUGGGAGCcgagGCCgcCGUGAGAc -3'
miRNA:   3'- -UUGCuuGUCCUCGa---CGGa-GCGUUCUc -5'
15663 5' -54.6 NC_004065.1 + 127709 0.68 0.926346
Target:  5'- cACGuguuuCGGGGGCUGCuCUCGCucuccGAGu -3'
miRNA:   3'- uUGCuu---GUCCUCGACG-GAGCGuu---CUC- -5'
15663 5' -54.6 NC_004065.1 + 68319 0.68 0.925811
Target:  5'- aGACGGugucgucguggcuGCGGGAGCUGCUgcaGCAgcugcccguGGAGa -3'
miRNA:   3'- -UUGCU-------------UGUCCUCGACGGag-CGU---------UCUC- -5'
15663 5' -54.6 NC_004065.1 + 221118 0.68 0.920882
Target:  5'- cGCGAACAGuaggcuGGCUGCCagGCA-GAGg -3'
miRNA:   3'- uUGCUUGUCc-----UCGACGGagCGUuCUC- -5'
15663 5' -54.6 NC_004065.1 + 201355 0.68 0.91518
Target:  5'- cGCGAACugcugcGcGAGCUgcGCCUCGCcGGGGg -3'
miRNA:   3'- uUGCUUGu-----C-CUCGA--CGGAGCGuUCUC- -5'
15663 5' -54.6 NC_004065.1 + 175886 0.68 0.903065
Target:  5'- cGACGGACAGGuAGUaacGCCUCaGguGGGGa -3'
miRNA:   3'- -UUGCUUGUCC-UCGa--CGGAG-CguUCUC- -5'
15663 5' -54.6 NC_004065.1 + 211155 0.68 0.903065
Target:  5'- gGAUGAACGuGAGCgaGCUggCGCAGGAGa -3'
miRNA:   3'- -UUGCUUGUcCUCGa-CGGa-GCGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 118290 0.69 0.889339
Target:  5'- cGACGAGCAGG-GCcGCCUgauccucCGuCGGGAGg -3'
miRNA:   3'- -UUGCUUGUCCuCGaCGGA-------GC-GUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 102415 0.69 0.87606
Target:  5'- cGACGGACGGGAGgaGCCggCGCc---- -3'
miRNA:   3'- -UUGCUUGUCCUCgaCGGa-GCGuucuc -5'
15663 5' -54.6 NC_004065.1 + 23615 0.69 0.875339
Target:  5'- aGGCGGGCAGGcggguggacgggcGGCUgGCCUcgggccgaCGCAGGAGc -3'
miRNA:   3'- -UUGCUUGUCC-------------UCGA-CGGA--------GCGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 173999 0.69 0.868754
Target:  5'- uGACGAACAGGAGCU-CCggcaGCAuGAc -3'
miRNA:   3'- -UUGCUUGUCCUCGAcGGag--CGUuCUc -5'
15663 5' -54.6 NC_004065.1 + 79896 0.69 0.861235
Target:  5'- cAUGGACAcGGAGCggucGuCCUCGCAcGAGg -3'
miRNA:   3'- uUGCUUGU-CCUCGa---C-GGAGCGUuCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.