miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 5' -53.5 NC_004065.1 + 132818 0.65 0.988037
Target:  5'- aCGGCGUAGgGCUucuugaugcucccgGGCGGCGAGUCGu- -3'
miRNA:   3'- -GUUGUAUCgUGG--------------CUGUCGCUCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 90376 0.66 0.986973
Target:  5'- -cGCAc-GCGCCGcACAGCuugGAGCCGGc -3'
miRNA:   3'- guUGUauCGUGGC-UGUCG---CUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 222954 0.66 0.986973
Target:  5'- gAGCcgGUGGUACCGgacGCGGCGgAGCCGu- -3'
miRNA:   3'- gUUG--UAUCGUGGC---UGUCGC-UCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 123931 0.66 0.986973
Target:  5'- cCGGCGcugcuGCACgGGCAGCGcGCCAc- -3'
miRNA:   3'- -GUUGUau---CGUGgCUGUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 87805 0.66 0.986973
Target:  5'- --gUAUGGgGCgGugGacGCGAGCCAGGg -3'
miRNA:   3'- guuGUAUCgUGgCugU--CGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 211464 0.66 0.986973
Target:  5'- gAAUAUcGCAgccguUCGGCcauGCGAGCCAGGc -3'
miRNA:   3'- gUUGUAuCGU-----GGCUGu--CGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 143016 0.66 0.986973
Target:  5'- aCGACGUcGCACCGGCGuCGuuUCGGAg -3'
miRNA:   3'- -GUUGUAuCGUGGCUGUcGCucGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 196691 0.66 0.986815
Target:  5'- -cGCGUGGCGgaCGGCAucacgaugcugcuGCGGGCCGGc -3'
miRNA:   3'- guUGUAUCGUg-GCUGU-------------CGCUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 124952 0.66 0.986495
Target:  5'- -cGCGUuGCG-CGGCAGCGccugcacgaagggcGGCCAGAg -3'
miRNA:   3'- guUGUAuCGUgGCUGUCGC--------------UCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 120865 0.66 0.985328
Target:  5'- -uACAUGcGCACCGGCuuGCccgGGGUCAGGg -3'
miRNA:   3'- guUGUAU-CGUGGCUGu-CG---CUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 166457 0.66 0.985328
Target:  5'- gCAGCAcgAGCACgGACAGCacGGGCgGuGAc -3'
miRNA:   3'- -GUUGUa-UCGUGgCUGUCG--CUCGgU-CU- -5'
15664 5' -53.5 NC_004065.1 + 124834 0.66 0.985328
Target:  5'- gGACGUGGCgACggacgagaacgUGACGGCGAaCCAGGc -3'
miRNA:   3'- gUUGUAUCG-UG-----------GCUGUCGCUcGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 113963 0.66 0.985155
Target:  5'- uCGGCGUcGGCGgCGGCAGCGGcgacggcGUCGGGa -3'
miRNA:   3'- -GUUGUA-UCGUgGCUGUCGCU-------CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 145607 0.66 0.983529
Target:  5'- --uUAUAGUACCGGgGGC-AGCCgAGAu -3'
miRNA:   3'- guuGUAUCGUGGCUgUCGcUCGG-UCU- -5'
15664 5' -53.5 NC_004065.1 + 116623 0.66 0.983529
Target:  5'- gGAUGU-GCACCGuCAGCGAGgUCGGc -3'
miRNA:   3'- gUUGUAuCGUGGCuGUCGCUC-GGUCu -5'
15664 5' -53.5 NC_004065.1 + 65899 0.66 0.983529
Target:  5'- gCGGC--GGCAgCGGCAGCGGGUccguCAGGu -3'
miRNA:   3'- -GUUGuaUCGUgGCUGUCGCUCG----GUCU- -5'
15664 5' -53.5 NC_004065.1 + 117726 0.66 0.983529
Target:  5'- aAACAccggUGGCGgCGAgCGGCcgcgGAGCCGGAc -3'
miRNA:   3'- gUUGU----AUCGUgGCU-GUCG----CUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 139232 0.66 0.983529
Target:  5'- --uCGUAGCACCG-C-GUGGGCuCGGAa -3'
miRNA:   3'- guuGUAUCGUGGCuGuCGCUCG-GUCU- -5'
15664 5' -53.5 NC_004065.1 + 128819 0.66 0.983529
Target:  5'- cCGACGUcGCugCcGCuGCGGGCgCAGAc -3'
miRNA:   3'- -GUUGUAuCGugGcUGuCGCUCG-GUCU- -5'
15664 5' -53.5 NC_004065.1 + 19853 0.66 0.981568
Target:  5'- gGACGaAGCuGCCGaAUGGCGuGCUAGAg -3'
miRNA:   3'- gUUGUaUCG-UGGC-UGUCGCuCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.