Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15670 | 5' | -55.7 | NC_004065.1 | + | 18301 | 1.11 | 0.003626 |
Target: 5'- cGAGAUCAGACUCGACCUCGCGCAGCCc -3' miRNA: 3'- -CUCUAGUCUGAGCUGGAGCGCGUCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 69071 | 0.85 | 0.168484 |
Target: 5'- -cGAcuUCAGcaGCUCGACCUCGCGCAGCg -3' miRNA: 3'- cuCU--AGUC--UGAGCUGGAGCGCGUCGg -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 229018 | 0.8 | 0.340214 |
Target: 5'- cGAGAUCGcGcACUCGGCCUCcCGCAGCg -3' miRNA: 3'- -CUCUAGU-C-UGAGCUGGAGcGCGUCGg -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 195555 | 0.76 | 0.501291 |
Target: 5'- cAGGUCAGACUCcGCCaUCGCGCcGCa -3' miRNA: 3'- cUCUAGUCUGAGcUGG-AGCGCGuCGg -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 162451 | 0.75 | 0.539458 |
Target: 5'- cGAGGccccugcgcuUCGG-CgaaGGCCUCGCGCGGCCg -3' miRNA: 3'- -CUCU----------AGUCuGag-CUGGAGCGCGUCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 194999 | 0.75 | 0.578561 |
Target: 5'- --cGUCGGACUCGGCgUCGUacaggaagaaGCGGCCg -3' miRNA: 3'- cucUAGUCUGAGCUGgAGCG----------CGUCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 162539 | 0.74 | 0.602325 |
Target: 5'- cAGGUCucggacgggcucucgAGACUCGAUCUCGUGCAuGUCg -3' miRNA: 3'- cUCUAG---------------UCUGAGCUGGAGCGCGU-CGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 27706 | 0.74 | 0.61824 |
Target: 5'- aGGGAUCGGGCgucuggccCGugCUCGCGC-GCUg -3' miRNA: 3'- -CUCUAGUCUGa-------GCugGAGCGCGuCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 100774 | 0.73 | 0.648126 |
Target: 5'- uGGggCGGGCUCaGCUUCGCGCGGUg -3' miRNA: 3'- cUCuaGUCUGAGcUGGAGCGCGUCGg -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 201007 | 0.73 | 0.687769 |
Target: 5'- -cGGUCuGACUCGagGCCgcgugCGCGCGGCg -3' miRNA: 3'- cuCUAGuCUGAGC--UGGa----GCGCGUCGg -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 124027 | 0.73 | 0.697591 |
Target: 5'- uGGGUCcGACaggCGACCggCGCGCGGCg -3' miRNA: 3'- cUCUAGuCUGa--GCUGGa-GCGCGUCGg -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 122863 | 0.72 | 0.726709 |
Target: 5'- ---cUCGGACUgGgACCUCGUGCuGCCc -3' miRNA: 3'- cucuAGUCUGAgC-UGGAGCGCGuCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 15977 | 0.72 | 0.73532 |
Target: 5'- aAGAaccuUCGGACgUCGAUCUCGacgugcuugaacuCGCAGCCa -3' miRNA: 3'- cUCU----AGUCUG-AGCUGGAGC-------------GCGUCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 100136 | 0.72 | 0.736272 |
Target: 5'- -cGAUCAGGgUCcGCCgcagCGCGCGGCa -3' miRNA: 3'- cuCUAGUCUgAGcUGGa---GCGCGUCGg -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 83268 | 0.72 | 0.736272 |
Target: 5'- gGGGAagaaguacUC-GAC-CGGCCUCGCGgCGGCCg -3' miRNA: 3'- -CUCU--------AGuCUGaGCUGGAGCGC-GUCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 157390 | 0.72 | 0.74575 |
Target: 5'- -cGAUCAauguaucucGACUCGACCUCGUucGCgAGUCg -3' miRNA: 3'- cuCUAGU---------CUGAGCUGGAGCG--CG-UCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 153459 | 0.72 | 0.74575 |
Target: 5'- uGGAUUAcGGggUGACCUCGCGCAugGCCa -3' miRNA: 3'- cUCUAGU-CUgaGCUGGAGCGCGU--CGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 172394 | 0.71 | 0.764412 |
Target: 5'- gGAGAUCGuauaacucGACUCcuuguGCCUCG-GCAGCCu -3' miRNA: 3'- -CUCUAGU--------CUGAGc----UGGAGCgCGUCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 163190 | 0.71 | 0.782629 |
Target: 5'- -cGAUCc-GCgUCGAUCUgGCGCGGCCa -3' miRNA: 3'- cuCUAGucUG-AGCUGGAgCGCGUCGG- -5' |
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15670 | 5' | -55.7 | NC_004065.1 | + | 113121 | 0.71 | 0.79155 |
Target: 5'- aGGAUCAGcaGCUCGAUCcCGCGCcccAGCg -3' miRNA: 3'- cUCUAGUC--UGAGCUGGaGCGCG---UCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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