miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 206549 0.69 0.86406
Target:  5'- --aAUCGGACUCGGCgUCGUcaucgucGCgAGCCg -3'
miRNA:   3'- cucUAGUCUGAGCUGgAGCG-------CG-UCGG- -5'
15670 5' -55.7 NC_004065.1 + 172394 0.71 0.764412
Target:  5'- gGAGAUCGuauaacucGACUCcuuguGCCUCG-GCAGCCu -3'
miRNA:   3'- -CUCUAGU--------CUGAGc----UGGAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 113121 0.71 0.79155
Target:  5'- aGGAUCAGcaGCUCGAUCcCGCGCcccAGCg -3'
miRNA:   3'- cUCUAGUC--UGAGCUGGaGCGCG---UCGg -5'
15670 5' -55.7 NC_004065.1 + 100183 0.71 0.800334
Target:  5'- cGGcUCAGACccugcaGGuCCUCGCGCAGCUu -3'
miRNA:   3'- cUCuAGUCUGag----CU-GGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 196339 0.71 0.800334
Target:  5'- gGGGA-CAgauGACUCGcAUCUCGCaGCGGCCc -3'
miRNA:   3'- -CUCUaGU---CUGAGC-UGGAGCG-CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 109945 0.7 0.808974
Target:  5'- gGAGGUCAuGAgUCG-CCUCuccgGCGCGGUCu -3'
miRNA:   3'- -CUCUAGU-CUgAGCuGGAG----CGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 126603 0.7 0.817463
Target:  5'- -cGAUCAGGCcgCGcuCCaUCGCGuCGGCCg -3'
miRNA:   3'- cuCUAGUCUGa-GCu-GG-AGCGC-GUCGG- -5'
15670 5' -55.7 NC_004065.1 + 24110 0.7 0.825791
Target:  5'- uGGcgCcGACgUCGGCCUCG-GCGGCCc -3'
miRNA:   3'- cUCuaGuCUG-AGCUGGAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 135050 0.7 0.849747
Target:  5'- aGAGGUCAGGCguacgCGGCagcCGCGgAGCg -3'
miRNA:   3'- -CUCUAGUCUGa----GCUGga-GCGCgUCGg -5'
15670 5' -55.7 NC_004065.1 + 153459 0.72 0.74575
Target:  5'- uGGAUUAcGGggUGACCUCGCGCAugGCCa -3'
miRNA:   3'- cUCUAGU-CUgaGCUGGAGCGCGU--CGG- -5'
15670 5' -55.7 NC_004065.1 + 100136 0.72 0.736272
Target:  5'- -cGAUCAGGgUCcGCCgcagCGCGCGGCa -3'
miRNA:   3'- cuCUAGUCUgAGcUGGa---GCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 83268 0.72 0.736272
Target:  5'- gGGGAagaaguacUC-GAC-CGGCCUCGCGgCGGCCg -3'
miRNA:   3'- -CUCU--------AGuCUGaGCUGGAGCGC-GUCGG- -5'
15670 5' -55.7 NC_004065.1 + 195555 0.76 0.501291
Target:  5'- cAGGUCAGACUCcGCCaUCGCGCcGCa -3'
miRNA:   3'- cUCUAGUCUGAGcUGG-AGCGCGuCGg -5'
15670 5' -55.7 NC_004065.1 + 162451 0.75 0.539458
Target:  5'- cGAGGccccugcgcuUCGG-CgaaGGCCUCGCGCGGCCg -3'
miRNA:   3'- -CUCU----------AGUCuGag-CUGGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 194999 0.75 0.578561
Target:  5'- --cGUCGGACUCGGCgUCGUacaggaagaaGCGGCCg -3'
miRNA:   3'- cucUAGUCUGAGCUGgAGCG----------CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 162539 0.74 0.602325
Target:  5'- cAGGUCucggacgggcucucgAGACUCGAUCUCGUGCAuGUCg -3'
miRNA:   3'- cUCUAG---------------UCUGAGCUGGAGCGCGU-CGG- -5'
15670 5' -55.7 NC_004065.1 + 27706 0.74 0.61824
Target:  5'- aGGGAUCGGGCgucuggccCGugCUCGCGC-GCUg -3'
miRNA:   3'- -CUCUAGUCUGa-------GCugGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 100774 0.73 0.648126
Target:  5'- uGGggCGGGCUCaGCUUCGCGCGGUg -3'
miRNA:   3'- cUCuaGUCUGAGcUGGAGCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 201007 0.73 0.687769
Target:  5'- -cGGUCuGACUCGagGCCgcgugCGCGCGGCg -3'
miRNA:   3'- cuCUAGuCUGAGC--UGGa----GCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 15977 0.72 0.73532
Target:  5'- aAGAaccuUCGGACgUCGAUCUCGacgugcuugaacuCGCAGCCa -3'
miRNA:   3'- cUCU----AGUCUG-AGCUGGAGC-------------GCGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.