miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 10365 0.67 0.931998
Target:  5'- uGAGAaaaugggcucuccUC-GACUCGuACCUCGCGCGuGUg -3'
miRNA:   3'- -CUCU-------------AGuCUGAGC-UGGAGCGCGU-CGg -5'
15670 5' -55.7 NC_004065.1 + 15977 0.72 0.73532
Target:  5'- aAGAaccuUCGGACgUCGAUCUCGacgugcuugaacuCGCAGCCa -3'
miRNA:   3'- cUCU----AGUCUG-AGCUGGAGC-------------GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 18301 1.11 0.003626
Target:  5'- cGAGAUCAGACUCGACCUCGCGCAGCCc -3'
miRNA:   3'- -CUCUAGUCUGAGCUGGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 19354 0.67 0.92745
Target:  5'- gGAGGUCucucgGGAggcguCUCGGUCUCGCGCucgGGCCu -3'
miRNA:   3'- -CUCUAG-----UCU-----GAGCUGGAGCGCG---UCGG- -5'
15670 5' -55.7 NC_004065.1 + 24110 0.7 0.825791
Target:  5'- uGGcgCcGACgUCGGCCUCG-GCGGCCc -3'
miRNA:   3'- cUCuaGuCUG-AGCUGGAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 25599 0.66 0.964836
Target:  5'- uGAGcagCAGGC-CGAUCUCGaUGgGGCCu -3'
miRNA:   3'- -CUCua-GUCUGaGCUGGAGC-GCgUCGG- -5'
15670 5' -55.7 NC_004065.1 + 27706 0.74 0.61824
Target:  5'- aGGGAUCGGGCgucuggccCGugCUCGCGC-GCUg -3'
miRNA:   3'- -CUCUAGUCUGa-------GCugGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 29399 0.67 0.92745
Target:  5'- -cGAUUcaGGGCUCGGCUgcccgUCGCGCugggcgaccGGCCu -3'
miRNA:   3'- cuCUAG--UCUGAGCUGG-----AGCGCG---------UCGG- -5'
15670 5' -55.7 NC_004065.1 + 31147 0.67 0.941899
Target:  5'- -cGAcUCGGGCaUCGACaC-CGcCGCGGCCg -3'
miRNA:   3'- cuCU-AGUCUG-AGCUG-GaGC-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 32721 0.66 0.958047
Target:  5'- aGAGGUCcauGAacuuggCGGCgUCGCGCgagaAGCCg -3'
miRNA:   3'- -CUCUAGu--CUga----GCUGgAGCGCG----UCGG- -5'
15670 5' -55.7 NC_004065.1 + 43521 0.66 0.961546
Target:  5'- gGAGAUCcGACcCGGuCCgCGCGCAGagaCg -3'
miRNA:   3'- -CUCUAGuCUGaGCU-GGaGCGCGUCg--G- -5'
15670 5' -55.7 NC_004065.1 + 48342 0.68 0.916685
Target:  5'- cGGGGUCGGAa--GACCgagGuCGCGGCCu -3'
miRNA:   3'- -CUCUAGUCUgagCUGGag-C-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 56305 0.66 0.967925
Target:  5'- aGAGAaucaucUUAGAgUCGACCUgagagagucUG-GCAGCCa -3'
miRNA:   3'- -CUCU------AGUCUgAGCUGGA---------GCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 59404 0.71 0.800334
Target:  5'- -cGAUCGGACUCucgccgucgucGCCUCGCGCucGCUc -3'
miRNA:   3'- cuCUAGUCUGAGc----------UGGAGCGCGu-CGG- -5'
15670 5' -55.7 NC_004065.1 + 59838 0.69 0.872022
Target:  5'- -cGAUgGGGCUCGAUCUUGaCGgAGCg -3'
miRNA:   3'- cuCUAgUCUGAGCUGGAGC-GCgUCGg -5'
15670 5' -55.7 NC_004065.1 + 59847 0.68 0.892465
Target:  5'- -cGA-CAGACagccguucgUCGACCaUGCGCAGUCg -3'
miRNA:   3'- cuCUaGUCUG---------AGCUGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 63303 0.69 0.857367
Target:  5'- cAGGUCcgGGAUcgUCG-CCUCGCGC-GCCg -3'
miRNA:   3'- cUCUAG--UCUG--AGCuGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 63506 0.67 0.92745
Target:  5'- cAGGUgCGGA--UGGCCUCGCccucGCGGCCg -3'
miRNA:   3'- cUCUA-GUCUgaGCUGGAGCG----CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 63579 0.66 0.961546
Target:  5'- gGAGAUCuacCUCGACCUCGauggggaaaGCA-CCg -3'
miRNA:   3'- -CUCUAGucuGAGCUGGAGCg--------CGUcGG- -5'
15670 5' -55.7 NC_004065.1 + 64623 0.66 0.961205
Target:  5'- aGAGA-CGGACuuccagaaggccaUCGACCgCGCGUccgccgugcuGGCCg -3'
miRNA:   3'- -CUCUaGUCUG-------------AGCUGGaGCGCG----------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.