miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15671 5' -58.7 NC_004065.1 + 18803 1.1 0.002579
Target:  5'- cGCCGGAGAGGUCGUCGGCGUCGAGUCc -3'
miRNA:   3'- -CGGCCUCUCCAGCAGCCGCAGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 111309 0.76 0.410563
Target:  5'- cGCCGGcaAGGaucUCGUCGGCGUCaucuGGGUCa -3'
miRNA:   3'- -CGGCCucUCC---AGCAGCCGCAG----CUCAG- -5'
15671 5' -58.7 NC_004065.1 + 113983 0.74 0.469209
Target:  5'- cGCCGGAguucuccGAGGU-GUCGGCGUCGGc-- -3'
miRNA:   3'- -CGGCCU-------CUCCAgCAGCCGCAGCUcag -5'
15671 5' -58.7 NC_004065.1 + 197956 0.73 0.524418
Target:  5'- gGCCGcGAc-GG-CGUCGGaCGUCGAGUCg -3'
miRNA:   3'- -CGGC-CUcuCCaGCAGCC-GCAGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 174654 0.73 0.533714
Target:  5'- uGCCGGAGgacugGGGUCGUCgccGGgaccucguucucCGUCGGGUCc -3'
miRNA:   3'- -CGGCCUC-----UCCAGCAG---CC------------GCAGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 102806 0.73 0.56193
Target:  5'- cCCGGGGAGGUgGUCGgGCGcggCGGGa- -3'
miRNA:   3'- cGGCCUCUCCAgCAGC-CGCa--GCUCag -5'
15671 5' -58.7 NC_004065.1 + 116123 0.72 0.590536
Target:  5'- cGCCGGAGGuagcuGGUCGgcguccugCGGCGgcucggggcCGGGUCg -3'
miRNA:   3'- -CGGCCUCU-----CCAGCa-------GCCGCa--------GCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 18588 0.72 0.600133
Target:  5'- -gCGGAGGGGccUCGUUGGUGUUGucGUCa -3'
miRNA:   3'- cgGCCUCUCC--AGCAGCCGCAGCu-CAG- -5'
15671 5' -58.7 NC_004065.1 + 31285 0.72 0.600133
Target:  5'- -aCGGAGAGGaggaCGUCGGCGgCGucGUCg -3'
miRNA:   3'- cgGCCUCUCCa---GCAGCCGCaGCu-CAG- -5'
15671 5' -58.7 NC_004065.1 + 151807 0.72 0.600133
Target:  5'- -gCGGcAGAGGUCGUCGGUGUCc---- -3'
miRNA:   3'- cgGCC-UCUCCAGCAGCCGCAGcucag -5'
15671 5' -58.7 NC_004065.1 + 121505 0.71 0.648305
Target:  5'- cGCUGGAccaGAGGUgG-CGGCGUCGAa-- -3'
miRNA:   3'- -CGGCCU---CUCCAgCaGCCGCAGCUcag -5'
15671 5' -58.7 NC_004065.1 + 92048 0.71 0.667541
Target:  5'- uGCCGGGGAGGUCGccaUGGCGgacgaCGA-UCu -3'
miRNA:   3'- -CGGCCUCUCCAGCa--GCCGCa----GCUcAG- -5'
15671 5' -58.7 NC_004065.1 + 145451 0.71 0.667541
Target:  5'- -aUGGAGAGG-CGaUGGCGUCGGGg- -3'
miRNA:   3'- cgGCCUCUCCaGCaGCCGCAGCUCag -5'
15671 5' -58.7 NC_004065.1 + 73955 0.7 0.696186
Target:  5'- aGCCGaGAcAGG-CGUCGGCGaggUCGAgGUCg -3'
miRNA:   3'- -CGGC-CUcUCCaGCAGCCGC---AGCU-CAG- -5'
15671 5' -58.7 NC_004065.1 + 98867 0.69 0.748349
Target:  5'- uGCCGGAacgGGGGUCGUCGucgcccacgcgcuCGUCGAcgcGUCu -3'
miRNA:   3'- -CGGCCU---CUCCAGCAGCc------------GCAGCU---CAG- -5'
15671 5' -58.7 NC_004065.1 + 172203 0.69 0.760999
Target:  5'- uCCGGAGGGacgcugaucucGUCGUCccCGUCGGGUCc -3'
miRNA:   3'- cGGCCUCUC-----------CAGCAGccGCAGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 120621 0.69 0.78741
Target:  5'- cGCCGGAGAGcgaaCGUCaGGCGcCGAcGUa -3'
miRNA:   3'- -CGGCCUCUCca--GCAG-CCGCaGCU-CAg -5'
15671 5' -58.7 NC_004065.1 + 98136 0.69 0.78741
Target:  5'- uCCGGAGAGGUCuggCGGUGau-AGUCg -3'
miRNA:   3'- cGGCCUCUCCAGca-GCCGCagcUCAG- -5'
15671 5' -58.7 NC_004065.1 + 200006 0.68 0.795975
Target:  5'- aCUGGAagcacuucGGGGUCGUgGGCcugCGGGUCg -3'
miRNA:   3'- cGGCCU--------CUCCAGCAgCCGca-GCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 108162 0.68 0.812705
Target:  5'- cGgCGaGAGAGGUCcuGUCGaGCGUCGAc-- -3'
miRNA:   3'- -CgGC-CUCUCCAG--CAGC-CGCAGCUcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.