Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 228000 | 0.67 | 0.866339 |
Target: 5'- aGCCGGAGAGGUUGUCaccUGUC-AGa- -3' miRNA: 3'- -CGGCCUCUCCAGCAGcc-GCAGcUCag -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 173560 | 0.68 | 0.828853 |
Target: 5'- cGgCGGGGAGGUCgGUCGaucaCGUCGuuUCg -3' miRNA: 3'- -CgGCCUCUCCAG-CAGCc---GCAGCucAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 85798 | 0.68 | 0.828853 |
Target: 5'- aGgCGcGAGAaccGG-CGUCGGCGagagucUCGAGUCg -3' miRNA: 3'- -CgGC-CUCU---CCaGCAGCCGC------AGCUCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 174361 | 0.68 | 0.828853 |
Target: 5'- cGCCGGAGGagauGGUgGUaguggugaCGGUGUCGuucauGGUCg -3' miRNA: 3'- -CGGCCUCU----CCAgCA--------GCCGCAGC-----UCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 25757 | 0.68 | 0.836692 |
Target: 5'- --aGGAccaGGGuGUCGUCGGCGaccUUGAGUCc -3' miRNA: 3'- cggCCU---CUC-CAGCAGCCGC---AGCUCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 64206 | 0.67 | 0.844366 |
Target: 5'- gGCgGGcGGAGGcagUGUCGGCGgCGAGg- -3' miRNA: 3'- -CGgCC-UCUCCa--GCAGCCGCaGCUCag -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 68656 | 0.67 | 0.844366 |
Target: 5'- gGCC-GAGGcGUacgcgcaGUCGGCGUaCGAGUCg -3' miRNA: 3'- -CGGcCUCUcCAg------CAGCCGCA-GCUCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 201881 | 0.67 | 0.858471 |
Target: 5'- aGCCGGucacgcAGAGGcCGaUGGCGUcccagacCGGGUCu -3' miRNA: 3'- -CGGCC------UCUCCaGCaGCCGCA-------GCUCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 29445 | 0.67 | 0.866339 |
Target: 5'- uGCCGGGGuAGGUgGcggagaacUUGGCGaUCGAGa- -3' miRNA: 3'- -CGGCCUC-UCCAgC--------AGCCGC-AGCUCag -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 118338 | 0.68 | 0.820855 |
Target: 5'- cGCCGacguccauGG-CGUCGGCGUCGGcGUCu -3' miRNA: 3'- -CGGCcucu----CCaGCAGCCGCAGCU-CAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 17998 | 0.68 | 0.820855 |
Target: 5'- uGUCGGGGAGcUgGagGGUGUCGuAGUCg -3' miRNA: 3'- -CGGCCUCUCcAgCagCCGCAGC-UCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 98136 | 0.69 | 0.78741 |
Target: 5'- uCCGGAGAGGUCuggCGGUGau-AGUCg -3' miRNA: 3'- cGGCCUCUCCAGca-GCCGCagcUCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 174654 | 0.73 | 0.533714 |
Target: 5'- uGCCGGAGgacugGGGUCGUCgccGGgaccucguucucCGUCGGGUCc -3' miRNA: 3'- -CGGCCUC-----UCCAGCAG---CC------------GCAGCUCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 116123 | 0.72 | 0.590536 |
Target: 5'- cGCCGGAGGuagcuGGUCGgcguccugCGGCGgcucggggcCGGGUCg -3' miRNA: 3'- -CGGCCUCU-----CCAGCa-------GCCGCa--------GCUCAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 18588 | 0.72 | 0.600133 |
Target: 5'- -gCGGAGGGGccUCGUUGGUGUUGucGUCa -3' miRNA: 3'- cgGCCUCUCC--AGCAGCCGCAGCu-CAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 31285 | 0.72 | 0.600133 |
Target: 5'- -aCGGAGAGGaggaCGUCGGCGgCGucGUCg -3' miRNA: 3'- cgGCCUCUCCa---GCAGCCGCaGCu-CAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 145451 | 0.71 | 0.667541 |
Target: 5'- -aUGGAGAGG-CGaUGGCGUCGGGg- -3' miRNA: 3'- cgGCCUCUCCaGCaGCCGCAGCUCag -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 73955 | 0.7 | 0.696186 |
Target: 5'- aGCCGaGAcAGG-CGUCGGCGaggUCGAgGUCg -3' miRNA: 3'- -CGGC-CUcUCCaGCAGCCGC---AGCU-CAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 98867 | 0.69 | 0.748349 |
Target: 5'- uGCCGGAacgGGGGUCGUCGucgcccacgcgcuCGUCGAcgcGUCu -3' miRNA: 3'- -CGGCCU---CUCCAGCAGCc------------GCAGCU---CAG- -5' |
|||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 172203 | 0.69 | 0.760999 |
Target: 5'- uCCGGAGGGacgcugaucucGUCGUCccCGUCGGGUCc -3' miRNA: 3'- cGGCCUCUC-----------CAGCAGccGCAGCUCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home