miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15671 5' -58.7 NC_004065.1 + 17998 0.68 0.820855
Target:  5'- uGUCGGGGAGcUgGagGGUGUCGuAGUCg -3'
miRNA:   3'- -CGGCCUCUCcAgCagCCGCAGC-UCAG- -5'
15671 5' -58.7 NC_004065.1 + 18588 0.72 0.600133
Target:  5'- -gCGGAGGGGccUCGUUGGUGUUGucGUCa -3'
miRNA:   3'- cgGCCUCUCC--AGCAGCCGCAGCu-CAG- -5'
15671 5' -58.7 NC_004065.1 + 18803 1.1 0.002579
Target:  5'- cGCCGGAGAGGUCGUCGGCGUCGAGUCc -3'
miRNA:   3'- -CGGCCUCUCCAGCAGCCGCAGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 25757 0.68 0.836692
Target:  5'- --aGGAccaGGGuGUCGUCGGCGaccUUGAGUCc -3'
miRNA:   3'- cggCCU---CUC-CAGCAGCCGC---AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 29445 0.67 0.866339
Target:  5'- uGCCGGGGuAGGUgGcggagaacUUGGCGaUCGAGa- -3'
miRNA:   3'- -CGGCCUC-UCCAgC--------AGCCGC-AGCUCag -5'
15671 5' -58.7 NC_004065.1 + 31099 0.66 0.899166
Target:  5'- gGCUGGuc--GUCGUCGGCuucGUCGAGg- -3'
miRNA:   3'- -CGGCCucucCAGCAGCCG---CAGCUCag -5'
15671 5' -58.7 NC_004065.1 + 31285 0.72 0.600133
Target:  5'- -aCGGAGAGGaggaCGUCGGCGgCGucGUCg -3'
miRNA:   3'- cgGCCUCUCCa---GCAGCCGCaGCu-CAG- -5'
15671 5' -58.7 NC_004065.1 + 53868 0.66 0.89111
Target:  5'- cGCCGG-GAuGGccacucCGUUGGCGcgacgggaaacaguUCGAGUCg -3'
miRNA:   3'- -CGGCCuCU-CCa-----GCAGCCGC--------------AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 61241 0.66 0.899166
Target:  5'- gGgCGGAGAGGaaggCGUCgaaggccugcgcGGCGUCGAc-- -3'
miRNA:   3'- -CgGCCUCUCCa---GCAG------------CCGCAGCUcag -5'
15671 5' -58.7 NC_004065.1 + 64206 0.67 0.844366
Target:  5'- gGCgGGcGGAGGcagUGUCGGCGgCGAGg- -3'
miRNA:   3'- -CGgCC-UCUCCa--GCAGCCGCaGCUCag -5'
15671 5' -58.7 NC_004065.1 + 68656 0.67 0.844366
Target:  5'- gGCC-GAGGcGUacgcgcaGUCGGCGUaCGAGUCg -3'
miRNA:   3'- -CGGcCUCUcCAg------CAGCCGCA-GCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 73955 0.7 0.696186
Target:  5'- aGCCGaGAcAGG-CGUCGGCGaggUCGAgGUCg -3'
miRNA:   3'- -CGGC-CUcUCCaGCAGCCGC---AGCU-CAG- -5'
15671 5' -58.7 NC_004065.1 + 75642 0.67 0.882712
Target:  5'- cGCCGGggaggagguggaaguGGAGGUCGgcgaGGCGgccgCGGGc- -3'
miRNA:   3'- -CGGCC---------------UCUCCAGCag--CCGCa---GCUCag -5'
15671 5' -58.7 NC_004065.1 + 85798 0.68 0.828853
Target:  5'- aGgCGcGAGAaccGG-CGUCGGCGagagucUCGAGUCg -3'
miRNA:   3'- -CgGC-CUCU---CCaGCAGCCGC------AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 87749 0.68 0.820855
Target:  5'- uGCUGGcGAGGUUGUgcgauaucugccCGGUGgCGGGUCc -3'
miRNA:   3'- -CGGCCuCUCCAGCA------------GCCGCaGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 92048 0.71 0.667541
Target:  5'- uGCCGGGGAGGUCGccaUGGCGgacgaCGA-UCu -3'
miRNA:   3'- -CGGCCUCUCCAGCa--GCCGCa----GCUcAG- -5'
15671 5' -58.7 NC_004065.1 + 96844 0.66 0.914783
Target:  5'- cCCGGGGAGugcagcgucGccacgcgucgcggcUCGUCGGCGgaCGAGUCc -3'
miRNA:   3'- cGGCCUCUC---------C--------------AGCAGCCGCa-GCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 98136 0.69 0.78741
Target:  5'- uCCGGAGAGGUCuggCGGUGau-AGUCg -3'
miRNA:   3'- cGGCCUCUCCAGca-GCCGCagcUCAG- -5'
15671 5' -58.7 NC_004065.1 + 98499 0.66 0.88663
Target:  5'- cGCCGucccGAGccGUCGUCGGCacccucgauccUCGAGUCc -3'
miRNA:   3'- -CGGC----CUCucCAGCAGCCGc----------AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 98867 0.69 0.748349
Target:  5'- uGCCGGAacgGGGGUCGUCGucgcccacgcgcuCGUCGAcgcGUCu -3'
miRNA:   3'- -CGGCCU---CUCCAGCAGCc------------GCAGCU---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.