miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 222622 0.72 0.497178
Target:  5'- -cGGCCCaGAagauGCGCGAGuACCGAGGagggccCGCg -3'
miRNA:   3'- guCCGGG-CU----CGCGCUC-UGGCUCU------GCG- -5'
15673 3' -60.7 NC_004065.1 + 123720 0.72 0.497178
Target:  5'- gGGGCUCGcAGCGCGGGucGCUGGgcGACGUg -3'
miRNA:   3'- gUCCGGGC-UCGCGCUC--UGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74042 0.72 0.506214
Target:  5'- --cGCCgGAGUGCGAGA-CGAGGCGg -3'
miRNA:   3'- gucCGGgCUCGCGCUCUgGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 110832 0.72 0.506214
Target:  5'- cCAGGCaCC-AGUGCGGGGCgCGGGcCGCc -3'
miRNA:   3'- -GUCCG-GGcUCGCGCUCUG-GCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 63879 0.71 0.533724
Target:  5'- uCAGGCUCGAcaCG-GGGAUCGAGAUGCc -3'
miRNA:   3'- -GUCCGGGCUc-GCgCUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113381 0.71 0.533724
Target:  5'- --cGCUgGGGCGCGGGAUCGAGcUGCu -3'
miRNA:   3'- gucCGGgCUCGCGCUCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 174971 0.71 0.561747
Target:  5'- gAGaGCCaCGGGCGaGAGACCGAGcgGCGg -3'
miRNA:   3'- gUC-CGG-GCUCGCgCUCUGGCUC--UGCg -5'
15673 3' -60.7 NC_004065.1 + 150134 0.71 0.57118
Target:  5'- uCGGGUUCGGGCGCGcAGGacauCCGAGA-GCu -3'
miRNA:   3'- -GUCCGGGCUCGCGC-UCU----GGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 42427 0.71 0.57118
Target:  5'- uGGGaCgUGAcGUGCGAGucgaucaacaGCCGAGACGCg -3'
miRNA:   3'- gUCC-GgGCU-CGCGCUC----------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 31387 0.7 0.580651
Target:  5'- --uGCCCGAGuCG-GAGACgGAGACGg -3'
miRNA:   3'- gucCGGGCUC-GCgCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 120566 0.7 0.590154
Target:  5'- -cGGCgCGAGCggGCGGGACCuccGGCGCc -3'
miRNA:   3'- guCCGgGCUCG--CGCUCUGGcu-CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 229265 0.7 0.590154
Target:  5'- aAGG-UCGAGCGCGAacCCGcGACGCg -3'
miRNA:   3'- gUCCgGGCUCGCGCUcuGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 33891 0.7 0.590154
Target:  5'- cCAGGC--GAGgGUGAGACCGcGGAUGCc -3'
miRNA:   3'- -GUCCGggCUCgCGCUCUGGC-UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 41490 0.7 0.609236
Target:  5'- --cGCCgGGGCGuCGGGACgGGGAgCGCg -3'
miRNA:   3'- gucCGGgCUCGC-GCUCUGgCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 124019 0.7 0.609236
Target:  5'- aCAGGCgaCCGGcGCGCGGcGcACCGAGGUGCu -3'
miRNA:   3'- -GUCCG--GGCU-CGCGCU-C-UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 88960 0.7 0.609236
Target:  5'- aCGGGCUCGcGCGUGAugguGGCCaccuGGGGCGCc -3'
miRNA:   3'- -GUCCGGGCuCGCGCU----CUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 85760 0.7 0.617844
Target:  5'- -cGGCCCGGGUcucucGaccugacauaaguCGGcGACCGAGGCGCg -3'
miRNA:   3'- guCCGGGCUCG-----C-------------GCU-CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 63764 0.7 0.618802
Target:  5'- -cGGCCgCGAGgGCGAGGCCauc-CGCa -3'
miRNA:   3'- guCCGG-GCUCgCGCUCUGGcucuGCG- -5'
15673 3' -60.7 NC_004065.1 + 31700 0.7 0.628377
Target:  5'- uCGGuGCCCGAGCGU---GCCGAuGACGg -3'
miRNA:   3'- -GUC-CGGGCUCGCGcucUGGCU-CUGCg -5'
15673 3' -60.7 NC_004065.1 + 198472 0.7 0.628377
Target:  5'- aCAGGCCgGGGgGCcu-GCCG-GACGCg -3'
miRNA:   3'- -GUCCGGgCUCgCGcucUGGCuCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.