miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 5' -55.8 NC_004065.1 + 19592 1.12 0.003442
Target:  5'- gAGACCUCCGCGAUGUAGCGUGCGUCCu -3'
miRNA:   3'- -UCUGGAGGCGCUACAUCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 73683 0.68 0.924912
Target:  5'- -aACCUCUGUG-UGUGGUGUGgGUUUu -3'
miRNA:   3'- ucUGGAGGCGCuACAUCGCACgCAGG- -5'
15673 5' -55.8 NC_004065.1 + 43758 0.67 0.930033
Target:  5'- cGGAUCUCCGUcucuccaaguGAUGUaucGGCG-GCG-CCg -3'
miRNA:   3'- -UCUGGAGGCG----------CUACA---UCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 98800 0.66 0.96625
Target:  5'- aGGACgaugCCGCGAcg-GGCG-GCGUCUc -3'
miRNA:   3'- -UCUGga--GGCGCUacaUCGCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 162688 0.73 0.684847
Target:  5'- gGGGCCUCgGCucGAgaUAGCGcgGCGUCCg -3'
miRNA:   3'- -UCUGGAGgCG--CUacAUCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 114273 0.71 0.779385
Target:  5'- gAGGCgCUCCGCGAUGUAacCGU-CGUCg -3'
miRNA:   3'- -UCUG-GAGGCGCUACAUc-GCAcGCAGg -5'
15673 5' -55.8 NC_004065.1 + 65995 0.71 0.788296
Target:  5'- aGGugCUCagcggcagcaGCGAguUGUacgAGUGUGCGUCCu -3'
miRNA:   3'- -UCugGAGg---------CGCU--ACA---UCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 138566 0.7 0.854211
Target:  5'- gAGGCCUCgcaCGCGAUcagGGCc-GCGUCCa -3'
miRNA:   3'- -UCUGGAG---GCGCUAca-UCGcaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 158804 0.69 0.876008
Target:  5'- -uGCCU-CGCGAUG-AGCGUGCGa-- -3'
miRNA:   3'- ucUGGAgGCGCUACaUCGCACGCagg -5'
15673 5' -55.8 NC_004065.1 + 222721 0.68 0.924912
Target:  5'- cGACCUCCcCGucugcGUAuCGUGCGUCg -3'
miRNA:   3'- uCUGGAGGcGCua---CAUcGCACGCAGg -5'
15673 5' -55.8 NC_004065.1 + 221994 0.68 0.914
Target:  5'- cGGACUgaucggggCCGCGGUGuUAGCGgucGUGUaCCu -3'
miRNA:   3'- -UCUGGa-------GGCGCUAC-AUCGCa--CGCA-GG- -5'
15673 5' -55.8 NC_004065.1 + 225159 0.69 0.868939
Target:  5'- cGGGCCUCCGCucaccgacGAcaccGUGGaCGUguacGCGUCCg -3'
miRNA:   3'- -UCUGGAGGCG--------CUa---CAUC-GCA----CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 144699 0.81 0.284503
Target:  5'- -cGCCUUCGCGAUcGUGGCGUGCGUg- -3'
miRNA:   3'- ucUGGAGGCGCUA-CAUCGCACGCAgg -5'
15673 5' -55.8 NC_004065.1 + 45139 0.68 0.919568
Target:  5'- -uGCCUCCGCGAac-GGag-GCGUCCu -3'
miRNA:   3'- ucUGGAGGCGCUacaUCgcaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 188252 0.79 0.394257
Target:  5'- cGGACCUCCGCGAgccaUGUuGCGcGCGgCCg -3'
miRNA:   3'- -UCUGGAGGCGCU----ACAuCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 128874 0.69 0.868222
Target:  5'- uGACCUCCGCcaacGAccgugggggcggcUGgcGCGUGCGgaugcgCCu -3'
miRNA:   3'- uCUGGAGGCG----CU-------------ACauCGCACGCa-----GG- -5'
15673 5' -55.8 NC_004065.1 + 226642 0.68 0.924912
Target:  5'- cGACCUCCGCGcucuccgaGUGgcucgaGGCGagGUGUCa -3'
miRNA:   3'- uCUGGAGGCGC--------UACa-----UCGCa-CGCAGg -5'
15673 5' -55.8 NC_004065.1 + 52554 0.67 0.930033
Target:  5'- gGGACa---GCGAUGgagAGUGUGCG-CCg -3'
miRNA:   3'- -UCUGgaggCGCUACa--UCGCACGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 78130 0.76 0.509
Target:  5'- aGGAUCUCCGCcAUGgucAGC-UGCGUCCg -3'
miRNA:   3'- -UCUGGAGGCGcUACa--UCGcACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 141055 0.71 0.788296
Target:  5'- aAGACCccuUCC-CGAUG-AGCGUcGCGUCUc -3'
miRNA:   3'- -UCUGG---AGGcGCUACaUCGCA-CGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.