miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 3' -54.2 NC_004065.1 + 32283 0.66 0.980675
Target:  5'- cGCUGUccGCGUCCUCGGUcuccUCGUCGg -3'
miRNA:   3'- -CGGUAccUGCAGGAGCCGu---AGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 73268 0.66 0.980675
Target:  5'- ----aGGGCGUCUcgcucguggCGGCAUCGUCGc -3'
miRNA:   3'- cgguaCCUGCAGGa--------GCCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 125851 0.66 0.978485
Target:  5'- gGUCGUGGGCagcugGUUCUCGGCcgUGUCc- -3'
miRNA:   3'- -CGGUACCUG-----CAGGAGCCGuaGUAGua -5'
15676 3' -54.2 NC_004065.1 + 206541 0.66 0.978485
Target:  5'- ----cGGACGcgaaucggaCUCGGCGUCGUCAUc -3'
miRNA:   3'- cgguaCCUGCag-------GAGCCGUAGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 118583 0.66 0.978485
Target:  5'- cGCCAUGGACGUCggCGGUccCGc--- -3'
miRNA:   3'- -CGGUACCUGCAGgaGCCGuaGUagua -5'
15676 3' -54.2 NC_004065.1 + 129693 0.66 0.973563
Target:  5'- cGCCA-GGGCGUCUUCG--AUUAUCAc -3'
miRNA:   3'- -CGGUaCCUGCAGGAGCcgUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 222894 0.66 0.973563
Target:  5'- -aCGUGGAUGUgaaagcUCUCGGCAUCGa--- -3'
miRNA:   3'- cgGUACCUGCA------GGAGCCGUAGUagua -5'
15676 3' -54.2 NC_004065.1 + 19394 0.66 0.970818
Target:  5'- aUCGUcGuCGUCCUCGGCAUCuUCu- -3'
miRNA:   3'- cGGUAcCuGCAGGAGCCGUAGuAGua -5'
15676 3' -54.2 NC_004065.1 + 38437 0.66 0.970818
Target:  5'- cGUCGUGGACGg---CGGCAggaggcUCAUCGg -3'
miRNA:   3'- -CGGUACCUGCaggaGCCGU------AGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 146744 0.66 0.970818
Target:  5'- cGCCcacaucuauGUGGGCGUCggCGGCGUCugccgCAUc -3'
miRNA:   3'- -CGG---------UACCUGCAGgaGCCGUAGua---GUA- -5'
15676 3' -54.2 NC_004065.1 + 135404 0.67 0.964724
Target:  5'- cGUCAUcGACGUCCcCGuCGUCAUCAc -3'
miRNA:   3'- -CGGUAcCUGCAGGaGCcGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 70713 0.67 0.964724
Target:  5'- cGCCGUGaaGGUGUCCUCGGguuugAUCGUCAc -3'
miRNA:   3'- -CGGUAC--CUGCAGGAGCCg----UAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 224382 0.67 0.961364
Target:  5'- uCCAUGuGGCGgcguUCCgUCGGCGUCAcCGUg -3'
miRNA:   3'- cGGUAC-CUGC----AGG-AGCCGUAGUaGUA- -5'
15676 3' -54.2 NC_004065.1 + 26017 0.68 0.949976
Target:  5'- aCCGUGG----CCUCGGCGUCGUCc- -3'
miRNA:   3'- cGGUACCugcaGGAGCCGUAGUAGua -5'
15676 3' -54.2 NC_004065.1 + 91450 0.68 0.949976
Target:  5'- gGCC-UGGACGccgaagcggcgCCU-GGCAUCGUCAc -3'
miRNA:   3'- -CGGuACCUGCa----------GGAgCCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 224879 0.68 0.949976
Target:  5'- aGCCAUccGGAcgcguacaCGUCCaCGGUGUCGUCGg -3'
miRNA:   3'- -CGGUA--CCU--------GCAGGaGCCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 168636 0.68 0.949976
Target:  5'- uGCCGcGGGCGgagCCggcgCGGCGaCGUCGUc -3'
miRNA:   3'- -CGGUaCCUGCa--GGa---GCCGUaGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 39106 0.68 0.949976
Target:  5'- gGCgAUGGGCGUCCcgCGGCAg------ -3'
miRNA:   3'- -CGgUACCUGCAGGa-GCCGUaguagua -5'
15676 3' -54.2 NC_004065.1 + 191718 0.68 0.94573
Target:  5'- -gCGUGGugGUgccgcaCCUCGGCGUCGa--- -3'
miRNA:   3'- cgGUACCugCA------GGAGCCGUAGUagua -5'
15676 3' -54.2 NC_004065.1 + 61802 0.68 0.94573
Target:  5'- uGCCGUGGcaguagcagcgcACGgacUCgaCGGCGUCGUCAa -3'
miRNA:   3'- -CGGUACC------------UGC---AGgaGCCGUAGUAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.