Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15676 | 5' | -58.1 | NC_004065.1 | + | 195426 | 0.73 | 0.497617 |
Target: 5'- ---cGCUcCCGCCGCgUCGCCGUCgUCg -3' miRNA: 3'- aguaCGAcGGCGGCG-AGUGGUAGgAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 151362 | 0.73 | 0.507003 |
Target: 5'- ---cGCUGCUGCCGUcgUCGCCGagCUCg -3' miRNA: 3'- aguaCGACGGCGGCG--AGUGGUagGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 130325 | 0.73 | 0.507003 |
Target: 5'- gCGgcgGCUGCUGCUGCgaaaCGCCGUCCg- -3' miRNA: 3'- aGUa--CGACGGCGGCGa---GUGGUAGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 176436 | 0.73 | 0.516464 |
Target: 5'- aCA-GCUGCCuccGCCGCcgUCGCCAUCgUCu -3' miRNA: 3'- aGUaCGACGG---CGGCG--AGUGGUAGgAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 170468 | 0.73 | 0.516464 |
Target: 5'- ---cGCUGCCGCCGCagACCGcucggcgagcUCUUCg -3' miRNA: 3'- aguaCGACGGCGGCGagUGGU----------AGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 97700 | 0.73 | 0.525996 |
Target: 5'- ---cGCUGCCGCCGC-CGCCcgggcuGUCCa- -3' miRNA: 3'- aguaCGACGGCGGCGaGUGG------UAGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 72381 | 0.72 | 0.554963 |
Target: 5'- gCGUGUUcaUCGCCGCgucCACCGUCCUCc -3' miRNA: 3'- aGUACGAc-GGCGGCGa--GUGGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 128146 | 0.72 | 0.554963 |
Target: 5'- gUCAUGCUGgCGUuaCGCUCGCCGggCCg- -3' miRNA: 3'- -AGUACGACgGCG--GCGAGUGGUa-GGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 135100 | 0.72 | 0.564727 |
Target: 5'- gUcgGCUGCUGCa--UCAUCAUCCUCa -3' miRNA: 3'- aGuaCGACGGCGgcgAGUGGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 114017 | 0.72 | 0.574534 |
Target: 5'- gUCGU-CUGCCGCCGCg-GCUGUcCCUCg -3' miRNA: 3'- -AGUAcGACGGCGGCGagUGGUA-GGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 148906 | 0.72 | 0.574534 |
Target: 5'- -uGUGCaUGCUGCUGUUCGCCAUCg-- -3' miRNA: 3'- agUACG-ACGGCGGCGAGUGGUAGgag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 21500 | 0.72 | 0.58438 |
Target: 5'- ---cGCUGuuGCCGCaCAUgAUCCUCu -3' miRNA: 3'- aguaCGACggCGGCGaGUGgUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 117462 | 0.71 | 0.594259 |
Target: 5'- gUCcgGCUccGCgGCCGCUCGCCG-CCa- -3' miRNA: 3'- -AGuaCGA--CGgCGGCGAGUGGUaGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 122498 | 0.71 | 0.594259 |
Target: 5'- gCAgcuggGCgGUCGCCGCgcgCACC-UCCUCg -3' miRNA: 3'- aGUa----CGaCGGCGGCGa--GUGGuAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 90611 | 0.71 | 0.603172 |
Target: 5'- gCGUGCggcgGCCGCUGCUgucacacgugcuaCGCCA-CCUCc -3' miRNA: 3'- aGUACGa---CGGCGGCGA-------------GUGGUaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 90157 | 0.71 | 0.604164 |
Target: 5'- cCGUcCUGCCGCCgGCUCcGCCG-CCUCc -3' miRNA: 3'- aGUAcGACGGCGG-CGAG-UGGUaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 170260 | 0.71 | 0.614088 |
Target: 5'- cCGUgGCcGCCGCCGC-CACCAUCg-- -3' miRNA: 3'- aGUA-CGaCGGCGGCGaGUGGUAGgag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 174256 | 0.71 | 0.624025 |
Target: 5'- gUCAUGCUGCCGgagcucCUGUUCGUCAUCgUCg -3' miRNA: 3'- -AGUACGACGGC------GGCGAGUGGUAGgAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 27531 | 0.71 | 0.633969 |
Target: 5'- gUCGgcgGC-GCCGCCGgUCucuUCGUCCUCg -3' miRNA: 3'- -AGUa--CGaCGGCGGCgAGu--GGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 45792 | 0.71 | 0.633969 |
Target: 5'- ---gGCUGCCGCCGC-CGCCGcggcgCCg- -3' miRNA: 3'- aguaCGACGGCGGCGaGUGGUa----GGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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