miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 3' -57.1 NC_004065.1 + 162522 0.66 0.938075
Target:  5'- aACCGCCCGAAAuguGGGuCUUcCGcCUCguuacGCa -3'
miRNA:   3'- -UGGUGGGCUUU---CCC-GAGaGC-GAGa----CG- -5'
15677 3' -57.1 NC_004065.1 + 30378 0.66 0.936672
Target:  5'- cGCCACCCGcccuccccAGGccgccggggcugcaGCUCUCGCUaccGCu -3'
miRNA:   3'- -UGGUGGGCuu------UCC--------------CGAGAGCGAga-CG- -5'
15677 3' -57.1 NC_004065.1 + 121257 0.66 0.93332
Target:  5'- cGCCACCUcu-AGGuccagcguGCUCUUGCUCguccGCa -3'
miRNA:   3'- -UGGUGGGcuuUCC--------CGAGAGCGAGa---CG- -5'
15677 3' -57.1 NC_004065.1 + 39832 0.66 0.932832
Target:  5'- gAUCugCCGGAucucuccGGGGUUCUCGCg---- -3'
miRNA:   3'- -UGGugGGCUU-------UCCCGAGAGCGagacg -5'
15677 3' -57.1 NC_004065.1 + 123734 0.66 0.928341
Target:  5'- gACCaacaACCCGu-GGGGCUCgcagcgcgggUCGCUggGCg -3'
miRNA:   3'- -UGG----UGGGCuuUCCCGAG----------AGCGAgaCG- -5'
15677 3' -57.1 NC_004065.1 + 127702 0.66 0.928341
Target:  5'- cACCACgcacguguuUCGggGGcuGCUCUCGCUCUcCg -3'
miRNA:   3'- -UGGUG---------GGCuuUCc-CGAGAGCGAGAcG- -5'
15677 3' -57.1 NC_004065.1 + 193760 0.66 0.927831
Target:  5'- uGCCGaCCGAGAGaugauggcgacuuGaGCUCgCGCUCUGUg -3'
miRNA:   3'- -UGGUgGGCUUUC-------------C-CGAGaGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 42983 0.66 0.923138
Target:  5'- gGCCGCCgcgcugCGAucacuGGGGCggaggagcgCUCGCcgaccUCUGCa -3'
miRNA:   3'- -UGGUGG------GCUu----UCCCGa--------GAGCG-----AGACG- -5'
15677 3' -57.1 NC_004065.1 + 24815 0.66 0.923138
Target:  5'- gACCGcgcgauCCCGAcgAGGGGCUCgucucCGCUgccgucgucgCUGCc -3'
miRNA:   3'- -UGGU------GGGCU--UUCCCGAGa----GCGA----------GACG- -5'
15677 3' -57.1 NC_004065.1 + 88610 0.66 0.922605
Target:  5'- gGCCGCggaCGAGAGcGGUcccauguacgauuUCUCcGCUCUGUu -3'
miRNA:   3'- -UGGUGg--GCUUUC-CCG-------------AGAG-CGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 123856 0.66 0.912059
Target:  5'- cGCUACCCGAAcaacccgcgcGGGcGCUCgUCGUcgaUGCu -3'
miRNA:   3'- -UGGUGGGCUU----------UCC-CGAG-AGCGag-ACG- -5'
15677 3' -57.1 NC_004065.1 + 59412 0.66 0.912059
Target:  5'- cGCgCGCCCGAucGGaCUCUCGCcgUCgucGCc -3'
miRNA:   3'- -UG-GUGGGCUuuCCcGAGAGCG--AGa--CG- -5'
15677 3' -57.1 NC_004065.1 + 120873 0.67 0.906186
Target:  5'- cACCggcuuGCCCGGGgucAGGGCggcgUCUCGCg--GCg -3'
miRNA:   3'- -UGG-----UGGGCUU---UCCCG----AGAGCGagaCG- -5'
15677 3' -57.1 NC_004065.1 + 19180 0.67 0.900092
Target:  5'- uUCugCCGAGGcGGGacacCUCcggcCGCUCUGCg -3'
miRNA:   3'- uGGugGGCUUU-CCC----GAGa---GCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 58231 0.67 0.89378
Target:  5'- cGCCGCgCaCG-AAGGGCUCcUCGCUgaGg -3'
miRNA:   3'- -UGGUG-G-GCuUUCCCGAG-AGCGAgaCg -5'
15677 3' -57.1 NC_004065.1 + 61591 0.67 0.887254
Target:  5'- uUCGCCCGGGucgccGcGGCUCUCGCcgUCgagUGCg -3'
miRNA:   3'- uGGUGGGCUUu----C-CCGAGAGCG--AG---ACG- -5'
15677 3' -57.1 NC_004065.1 + 115206 0.67 0.887254
Target:  5'- gGCCGCCgCGAcGGGGCauacCGCcgggCUGCu -3'
miRNA:   3'- -UGGUGG-GCUuUCCCGaga-GCGa---GACG- -5'
15677 3' -57.1 NC_004065.1 + 113785 0.67 0.88659
Target:  5'- gACCgACUCGGGc-GGCUUcuucagacacguuUCGCUCUGCg -3'
miRNA:   3'- -UGG-UGGGCUUucCCGAG-------------AGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 129966 0.67 0.880516
Target:  5'- cGCuCACgCGAgcGAGGG-UCagGCUCUGCg -3'
miRNA:   3'- -UG-GUGgGCU--UUCCCgAGagCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 35657 0.67 0.880516
Target:  5'- uCCACgCGAGGGGggaGCUgUUGCgCUGCg -3'
miRNA:   3'- uGGUGgGCUUUCC---CGAgAGCGaGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.