miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 118364 0.71 0.56537
Target:  5'- cGCGC-GGCGaCGAGAgacGCCauggGCGCCGc -3'
miRNA:   3'- -CGCGaCCGC-GCUCUa--UGGg---CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 122824 0.71 0.56537
Target:  5'- gGCGCUGGCGacCGAGAUcaACCaGCGCauGa -3'
miRNA:   3'- -CGCGACCGC--GCUCUA--UGGgCGCGgcC- -5'
15677 5' -60.8 NC_004065.1 + 24774 0.71 0.574774
Target:  5'- -gGCcGGCGCGGGuauCUCGCGCCa- -3'
miRNA:   3'- cgCGaCCGCGCUCuauGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 128851 0.71 0.574774
Target:  5'- gGCgGCUGGCGCGugcGGAUGCgccuUCGCcGCCGa -3'
miRNA:   3'- -CG-CGACCGCGC---UCUAUG----GGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 2092 0.7 0.584212
Target:  5'- cGCGCUGcGCGCGu-AUGCCgaGCGUgGGa -3'
miRNA:   3'- -CGCGAC-CGCGCucUAUGGg-CGCGgCC- -5'
15677 5' -60.8 NC_004065.1 + 126750 0.7 0.593681
Target:  5'- gGCGCaUGGCGaCGcGGGUGCagCGCGCCa- -3'
miRNA:   3'- -CGCG-ACCGC-GC-UCUAUGg-GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 151498 0.7 0.593681
Target:  5'- aGCGgccaggacCUGGaCGCucGAGGUcuucCCCGCGCCGGc -3'
miRNA:   3'- -CGC--------GACC-GCG--CUCUAu---GGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 54834 0.7 0.603175
Target:  5'- aGCGgaGaGCGCGAGAcAacagcagucUCCGCGCCGc -3'
miRNA:   3'- -CGCgaC-CGCGCUCUaU---------GGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 124846 0.7 0.603175
Target:  5'- cGCGCUGGUGCGGGAcg-UgGCGaCGGa -3'
miRNA:   3'- -CGCGACCGCGCUCUaugGgCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 87030 0.7 0.612687
Target:  5'- -gGggGGUGgGAGAUggACCCGCGgCGGg -3'
miRNA:   3'- cgCgaCCGCgCUCUA--UGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 201361 0.7 0.612687
Target:  5'- cUGCU-GCGCGAGcUGCgCCuCGCCGGg -3'
miRNA:   3'- cGCGAcCGCGCUCuAUG-GGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 97246 0.7 0.622211
Target:  5'- gGCGCacGGCGCuucuGGcgACCuuCGCGCCGGu -3'
miRNA:   3'- -CGCGa-CCGCGc---UCuaUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 94014 0.7 0.622211
Target:  5'- gGCGCUGGUcuggggagccaaGCGGGGUGCgaggaaUCGaGCCGGg -3'
miRNA:   3'- -CGCGACCG------------CGCUCUAUG------GGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 117721 0.7 0.622211
Target:  5'- cCGgUGGCgGCGAGcgGCCgCGgaGCCGGa -3'
miRNA:   3'- cGCgACCG-CGCUCuaUGG-GCg-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 111128 0.7 0.626023
Target:  5'- gGCGCacgaugaagucggcaUGGCgacgguucgacGCGGGcgGCCCGCGCCc- -3'
miRNA:   3'- -CGCG---------------ACCG-----------CGCUCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 43590 0.7 0.631742
Target:  5'- aCGC-GGCGCGuGGggcguCCC-CGCCGGg -3'
miRNA:   3'- cGCGaCCGCGCuCUau---GGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 125258 0.69 0.639367
Target:  5'- cGCuGCUGGCGUacguGAGcgcgcugcacgACCCGCGCCu- -3'
miRNA:   3'- -CG-CGACCGCG----CUCua---------UGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 229596 0.69 0.645085
Target:  5'- uCGCUGGUcgaGCGAccgcccggguuucgaGAUGCCCGUcguaacgcgacGCCGGu -3'
miRNA:   3'- cGCGACCG---CGCU---------------CUAUGGGCG-----------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 168621 0.69 0.650798
Target:  5'- gGCuGCUGGCGCu-GGUGCCgCGggcggaGCCGGc -3'
miRNA:   3'- -CG-CGACCGCGcuCUAUGG-GCg-----CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 24214 0.69 0.660311
Target:  5'- aCGC-GGUugGCGAGGUuucGCUCGCGCCaGGa -3'
miRNA:   3'- cGCGaCCG--CGCUCUA---UGGGCGCGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.