miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
158 3' -64.1 AC_000007.1 + 5398 1.12 0.000043
Target:  5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3'
miRNA:   3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 25533 0.8 0.017727
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 5464 0.79 0.022325
Target:  5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3'
miRNA:   3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5'
158 3' -64.1 AC_000007.1 + 22785 0.77 0.030976
Target:  5'- gCUGGCCAGCGUGCAccaCCCGGcgcugauaguguuccAGUGCu -3'
miRNA:   3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5'
158 3' -64.1 AC_000007.1 + 11226 0.73 0.065986
Target:  5'- --gGGCCuG-GCGCGGCuaGGAGCGCc -3'
miRNA:   3'- ggaCCGGuCgCGCGUCGggCCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 5468 0.72 0.073829
Target:  5'- gCgUGGCCcuuGGCGCGCAGCUUgcccuuggaGGAgGCGCc -3'
miRNA:   3'- -GgACCGG---UCGCGCGUCGGG---------CCU-CGCG- -5'
158 3' -64.1 AC_000007.1 + 17412 0.72 0.08029
Target:  5'- uCCUGGaaCGGCGCG-GGCgCCGGGGgGCu -3'
miRNA:   3'- -GGACCg-GUCGCGCgUCG-GGCCUCgCG- -5'
158 3' -64.1 AC_000007.1 + 16411 0.71 0.087289
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
158 3' -64.1 AC_000007.1 + 10805 0.7 0.11472
Target:  5'- aCUGGCC-GCGCGCGGCguaagcgguuaggCUGGAaaGCg -3'
miRNA:   3'- gGACCGGuCGCGCGUCG-------------GGCCUcgCG- -5'
158 3' -64.1 AC_000007.1 + 5341 0.7 0.118224
Target:  5'- uCCgGGCU-GCGCGCuGGCCagGGuGCGCu -3'
miRNA:   3'- -GGaCCGGuCGCGCG-UCGGg-CCuCGCG- -5'
158 3' -64.1 AC_000007.1 + 12633 0.69 0.121164
Target:  5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3'
miRNA:   3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5'
158 3' -64.1 AC_000007.1 + 22656 0.69 0.121495
Target:  5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3'
miRNA:   3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5'
158 3' -64.1 AC_000007.1 + 10357 0.69 0.124851
Target:  5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3'
miRNA:   3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5'
158 3' -64.1 AC_000007.1 + 6453 0.69 0.131821
Target:  5'- aCCgcGGUUGGCGCGUgcaccugguGCCCGacGAGCGCa -3'
miRNA:   3'- -GGa-CCGGUCGCGCGu--------CGGGC--CUCGCG- -5'
158 3' -64.1 AC_000007.1 + 16043 0.69 0.139149
Target:  5'- --cGGCCGcguuuGUGCGCGcCCCaGGGCGCg -3'
miRNA:   3'- ggaCCGGU-----CGCGCGUcGGGcCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 25029 0.68 0.146848
Target:  5'- gCUGGCUugAGaCGCGCgAGCCUgccgacuuggaGGAGCGa -3'
miRNA:   3'- gGACCGG--UC-GCGCG-UCGGG-----------CCUCGCg -5'
158 3' -64.1 AC_000007.1 + 11523 0.68 0.150438
Target:  5'- --cGGCCGccacgugugcGCGCGCGGgacuaauCCCGGuccGCGCg -3'
miRNA:   3'- ggaCCGGU----------CGCGCGUC-------GGGCCu--CGCG- -5'
158 3' -64.1 AC_000007.1 + 25361 0.68 0.156599
Target:  5'- aCCUGGCaaacggccaugGGCGUGUGGCagcaaugccuggaGGAGCGCa -3'
miRNA:   3'- -GGACCGg----------UCGCGCGUCGgg-----------CCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 15968 0.67 0.172325
Target:  5'- --cGGCacuacCGCGC-GCCCuGGGGCGCg -3'
miRNA:   3'- ggaCCGguc--GCGCGuCGGG-CCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 18543 0.67 0.176936
Target:  5'- gCUGGcCCAGCacuccgGUAGCCauGGGCGCg -3'
miRNA:   3'- gGACC-GGUCGcg----CGUCGGgcCUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.