Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
158 | 3' | -64.1 | AC_000007.1 | + | 809 | 0.66 | 0.217918 |
Target: 5'- ---cGCCGGCGCcCGGUucuCCGGAGcCGCc -3' miRNA: 3'- ggacCGGUCGCGcGUCG---GGCCUC-GCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 4605 | 0.66 | 0.223577 |
Target: 5'- --gGGCCcacgGGCG-GCGGCCUGG-GCGa -3' miRNA: 3'- ggaCCGG----UCGCgCGUCGGGCCuCGCg -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 5341 | 0.7 | 0.118224 |
Target: 5'- uCCgGGCU-GCGCGCuGGCCagGGuGCGCu -3' miRNA: 3'- -GGaCCGGuCGCGCG-UCGGg-CCuCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 5398 | 1.12 | 0.000043 |
Target: 5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3' miRNA: 3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 5464 | 0.79 | 0.022325 |
Target: 5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3' miRNA: 3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 5468 | 0.72 | 0.073829 |
Target: 5'- gCgUGGCCcuuGGCGCGCAGCUUgcccuuggaGGAgGCGCc -3' miRNA: 3'- -GgACCGG---UCGCGCGUCGGG---------CCU-CGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 5663 | 0.66 | 0.205367 |
Target: 5'- aCCUGGCUcguGGaaugcgagaccgucUGCGgGGCCUGcGGCGCg -3' miRNA: 3'- -GGACCGG---UC--------------GCGCgUCGGGCcUCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 6453 | 0.69 | 0.131821 |
Target: 5'- aCCgcGGUUGGCGCGUgcaccugguGCCCGacGAGCGCa -3' miRNA: 3'- -GGa-CCGGUCGCGCGu--------CGGGC--CUCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 7197 | 0.66 | 0.206968 |
Target: 5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3' miRNA: 3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 8697 | 0.67 | 0.186491 |
Target: 5'- uCCU-GCCcGCGCGCGGCgCCGacGUGCc -3' miRNA: 3'- -GGAcCGGuCGCGCGUCG-GGCcuCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 10357 | 0.69 | 0.124851 |
Target: 5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3' miRNA: 3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 10805 | 0.7 | 0.11472 |
Target: 5'- aCUGGCC-GCGCGCGGCguaagcgguuaggCUGGAaaGCg -3' miRNA: 3'- gGACCGGuCGCGCGUCG-------------GGCCUcgCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 11226 | 0.73 | 0.065986 |
Target: 5'- --gGGCCuG-GCGCGGCuaGGAGCGCc -3' miRNA: 3'- ggaCCGGuCgCGCGUCGggCCUCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 11523 | 0.68 | 0.150438 |
Target: 5'- --cGGCCGccacgugugcGCGCGCGGgacuaauCCCGGuccGCGCg -3' miRNA: 3'- ggaCCGGU----------CGCGCGUC-------GGGCCu--CGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 12211 | 0.67 | 0.18023 |
Target: 5'- uCC-GGCCccagcugccuccagGGCGCGuCGGCuuGGggcccAGCGCa -3' miRNA: 3'- -GGaCCGG--------------UCGCGC-GUCGggCC-----UCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 12633 | 0.69 | 0.121164 |
Target: 5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3' miRNA: 3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 15968 | 0.67 | 0.172325 |
Target: 5'- --cGGCacuacCGCGC-GCCCuGGGGCGCg -3' miRNA: 3'- ggaCCGguc--GCGCGuCGGG-CCUCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 16043 | 0.69 | 0.139149 |
Target: 5'- --cGGCCGcguuuGUGCGCGcCCCaGGGCGCg -3' miRNA: 3'- ggaCCGGU-----CGCGCGUcGGGcCUCGCG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 16104 | 0.66 | 0.206433 |
Target: 5'- --cGGCCAuucagaccgugguGCGCGgAGCCCGGcGUuauGCu -3' miRNA: 3'- ggaCCGGU-------------CGCGCgUCGGGCCuCG---CG- -5' |
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158 | 3' | -64.1 | AC_000007.1 | + | 16329 | 0.66 | 0.206968 |
Target: 5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3' miRNA: 3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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