miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
158 3' -64.1 AC_000007.1 + 11226 0.73 0.065986
Target:  5'- --gGGCCuG-GCGCGGCuaGGAGCGCc -3'
miRNA:   3'- ggaCCGGuCgCGCGUCGggCCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 23242 0.67 0.196496
Target:  5'- ---aGCCAcaaCGCGCAGCCCGuGGGCu- -3'
miRNA:   3'- ggacCGGUc--GCGCGUCGGGC-CUCGcg -5'
158 3' -64.1 AC_000007.1 + 16104 0.66 0.206433
Target:  5'- --cGGCCAuucagaccgugguGCGCGgAGCCCGGcGUuauGCu -3'
miRNA:   3'- ggaCCGGU-------------CGCGCgUCGGGCCuCG---CG- -5'
158 3' -64.1 AC_000007.1 + 7197 0.66 0.206968
Target:  5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3'
miRNA:   3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5'
158 3' -64.1 AC_000007.1 + 16329 0.66 0.206968
Target:  5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3'
miRNA:   3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5'
158 3' -64.1 AC_000007.1 + 23837 0.66 0.212382
Target:  5'- -aUGGCCGcgggcuggguGUGCGCGGCaCC--AGCGCa -3'
miRNA:   3'- ggACCGGU----------CGCGCGUCG-GGccUCGCG- -5'
158 3' -64.1 AC_000007.1 + 809 0.66 0.217918
Target:  5'- ---cGCCGGCGCcCGGUucuCCGGAGcCGCc -3'
miRNA:   3'- ggacCGGUCGCGcGUCG---GGCCUC-GCG- -5'
158 3' -64.1 AC_000007.1 + 21890 0.66 0.217918
Target:  5'- --cGGCCGGuCGCG-AGaCUgGGGGCGUa -3'
miRNA:   3'- ggaCCGGUC-GCGCgUC-GGgCCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 4605 0.66 0.223577
Target:  5'- --gGGCCcacgGGCG-GCGGCCUGG-GCGa -3'
miRNA:   3'- ggaCCGG----UCGCgCGUCGGGCCuCGCg -5'
158 3' -64.1 AC_000007.1 + 22309 0.67 0.186491
Target:  5'- uCCgcaGCCacAGUGCGCAGauuaGGAGCGCc -3'
miRNA:   3'- -GGac-CGG--UCGCGCGUCggg-CCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 15968 0.67 0.172325
Target:  5'- --cGGCacuacCGCGC-GCCCuGGGGCGCg -3'
miRNA:   3'- ggaCCGguc--GCGCGuCGGG-CCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 5468 0.72 0.073829
Target:  5'- gCgUGGCCcuuGGCGCGCAGCUUgcccuuggaGGAgGCGCc -3'
miRNA:   3'- -GgACCGG---UCGCGCGUCGGG---------CCU-CGCG- -5'
158 3' -64.1 AC_000007.1 + 16411 0.71 0.087289
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
158 3' -64.1 AC_000007.1 + 10805 0.7 0.11472
Target:  5'- aCUGGCC-GCGCGCGGCguaagcgguuaggCUGGAaaGCg -3'
miRNA:   3'- gGACCGGuCGCGCGUCG-------------GGCCUcgCG- -5'
158 3' -64.1 AC_000007.1 + 5341 0.7 0.118224
Target:  5'- uCCgGGCU-GCGCGCuGGCCagGGuGCGCu -3'
miRNA:   3'- -GGaCCGGuCGCGCG-UCGGg-CCuCGCG- -5'
158 3' -64.1 AC_000007.1 + 12633 0.69 0.121164
Target:  5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3'
miRNA:   3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5'
158 3' -64.1 AC_000007.1 + 10357 0.69 0.124851
Target:  5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3'
miRNA:   3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5'
158 3' -64.1 AC_000007.1 + 25029 0.68 0.146848
Target:  5'- gCUGGCUugAGaCGCGCgAGCCUgccgacuuggaGGAGCGa -3'
miRNA:   3'- gGACCGG--UC-GCGCG-UCGGG-----------CCUCGCg -5'
158 3' -64.1 AC_000007.1 + 25361 0.68 0.156599
Target:  5'- aCCUGGCaaacggccaugGGCGUGUGGCagcaaugccuggaGGAGCGCa -3'
miRNA:   3'- -GGACCGg----------UCGCGCGUCGgg-----------CCUCGCG- -5'
158 3' -64.1 AC_000007.1 + 5398 1.12 0.000043
Target:  5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3'
miRNA:   3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.