miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 5' -52 NC_004084.1 + 57871 1.04 0.006091
Target:  5'- cCGCCUUGUCGCAG-UCGACUCGAACCg -3'
miRNA:   3'- -GCGGAACAGCGUCuAGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 57630 0.69 0.759559
Target:  5'- uCGUCUcgagGUCGCGcGUCGcCUCGAcgaGCCg -3'
miRNA:   3'- -GCGGAa---CAGCGUcUAGCuGAGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 56831 0.67 0.854312
Target:  5'- uGCCaaccagCGCGGGccUCGAgcCUCGGGCCa -3'
miRNA:   3'- gCGGaaca--GCGUCU--AGCU--GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 55209 0.68 0.827928
Target:  5'- gGCCgacacgGUacaccCGCAGAUCGcuCUCgGAACCg -3'
miRNA:   3'- gCGGaa----CA-----GCGUCUAGCu-GAG-CUUGG- -5'
16250 5' -52 NC_004084.1 + 53406 0.7 0.684727
Target:  5'- aGCCcgUUGauccccUCuCGGAUCGACUCGAGCg -3'
miRNA:   3'- gCGG--AAC------AGcGUCUAGCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 53233 0.75 0.44844
Target:  5'- cCGCCUcgucuacccaGUCGUcGAUCGACUCGAgugcuGCCu -3'
miRNA:   3'- -GCGGAa---------CAGCGuCUAGCUGAGCU-----UGG- -5'
16250 5' -52 NC_004084.1 + 53187 0.66 0.886158
Target:  5'- aGCCaacUUGUCGagucuuccguGAUCGuCUCGAGCg -3'
miRNA:   3'- gCGG---AACAGCgu--------CUAGCuGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 52286 0.66 0.913809
Target:  5'- gGCgCUgGUCGCGGAaucgcaUCGACcUGAACg -3'
miRNA:   3'- gCG-GAaCAGCGUCU------AGCUGaGCUUGg -5'
16250 5' -52 NC_004084.1 + 51186 0.67 0.870736
Target:  5'- gCGCCgaucGUCG-AGGUCGGCgcuggcgCGGGCUa -3'
miRNA:   3'- -GCGGaa--CAGCgUCUAGCUGa------GCUUGG- -5'
16250 5' -52 NC_004084.1 + 48559 0.66 0.907306
Target:  5'- -aCCUcGUCGCGG-UCGAggCGAAUCa -3'
miRNA:   3'- gcGGAaCAGCGUCuAGCUgaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 47137 0.74 0.488902
Target:  5'- uCGCCcucacUGUU-CAGGUCGAgCUCGAACCg -3'
miRNA:   3'- -GCGGa----ACAGcGUCUAGCU-GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 47047 0.66 0.886158
Target:  5'- uGCCagggUGcucgaaUCGUGuGcUCGACUCGAACCg -3'
miRNA:   3'- gCGGa---AC------AGCGU-CuAGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 45731 0.66 0.900528
Target:  5'- aCGCg--GU-GCuGGUCGGCUaCGAACCa -3'
miRNA:   3'- -GCGgaaCAgCGuCUAGCUGA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 45455 0.68 0.799669
Target:  5'- aCGCCgcc-CGCgAGAUCGAagcCGAGCCu -3'
miRNA:   3'- -GCGGaacaGCG-UCUAGCUga-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 45018 0.67 0.862646
Target:  5'- aCGaUCgaGUCGCGGuUCaGCUCGAACUg -3'
miRNA:   3'- -GC-GGaaCAGCGUCuAGcUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 44622 0.66 0.900528
Target:  5'- uCGCCUcgGUCGCgaccaaccGGAcgCGAuCUcCGAGCCc -3'
miRNA:   3'- -GCGGAa-CAGCG--------UCUa-GCU-GA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 42715 0.69 0.749171
Target:  5'- aCGaCCcUGUCGCGucggcgaguuGAUCGGCUgCGAGCg -3'
miRNA:   3'- -GC-GGaACAGCGU----------CUAGCUGA-GCUUGg -5'
16250 5' -52 NC_004084.1 + 42131 0.66 0.900528
Target:  5'- uGCCguugaggugacUGUUGCAGGgacugcacUCGACUgcaGAACCg -3'
miRNA:   3'- gCGGa----------ACAGCGUCU--------AGCUGAg--CUUGG- -5'
16250 5' -52 NC_004084.1 + 40269 0.66 0.913809
Target:  5'- aCGCUcg--CGCuGAUCGACcCGGACUc -3'
miRNA:   3'- -GCGGaacaGCGuCUAGCUGaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 39554 0.7 0.684727
Target:  5'- gGCCag--CGC-GAUCGACUCGA-CCg -3'
miRNA:   3'- gCGGaacaGCGuCUAGCUGAGCUuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.