miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 5' -52 NC_004084.1 + 4191 0.73 0.520338
Target:  5'- uCGCUccgacGUCG-AGAUcCGACUCGAGCCg -3'
miRNA:   3'- -GCGGaa---CAGCgUCUA-GCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 12023 0.66 0.886158
Target:  5'- uCGCC--GUCGCcGAucgUCGAUUCGA-CCu -3'
miRNA:   3'- -GCGGaaCAGCGuCU---AGCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 8283 0.66 0.886158
Target:  5'- aCGaCCUcGucauccggacgaUCGCGGGccUCGACUCGAaguACCg -3'
miRNA:   3'- -GC-GGAaC------------AGCGUCU--AGCUGAGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 44622 0.66 0.900528
Target:  5'- uCGCCUcgGUCGCgaccaaccGGAcgCGAuCUcCGAGCCc -3'
miRNA:   3'- -GCGGAa-CAGCG--------UCUa-GCU-GA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 45731 0.66 0.900528
Target:  5'- aCGCg--GU-GCuGGUCGGCUaCGAACCa -3'
miRNA:   3'- -GCGgaaCAgCGuCUAGCUGA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 48559 0.66 0.907306
Target:  5'- -aCCUcGUCGCGG-UCGAggCGAAUCa -3'
miRNA:   3'- gcGGAaCAGCGUCuAGCUgaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 26297 0.66 0.913809
Target:  5'- gGUCU-GUCGacCAGAUCGugUCGuACg -3'
miRNA:   3'- gCGGAaCAGC--GUCUAGCugAGCuUGg -5'
16250 5' -52 NC_004084.1 + 40269 0.66 0.913809
Target:  5'- aCGCUcg--CGCuGAUCGACcCGGACUc -3'
miRNA:   3'- -GCGGaacaGCGuCUAGCUGaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 52286 0.66 0.913809
Target:  5'- gGCgCUgGUCGCGGAaucgcaUCGACcUGAACg -3'
miRNA:   3'- gCG-GAaCAGCGUCU------AGCUGaGCUUGg -5'
16250 5' -52 NC_004084.1 + 20850 0.67 0.878576
Target:  5'- uCGCCgaggGUgGCAcGUCGAC-CGcGCCg -3'
miRNA:   3'- -GCGGaa--CAgCGUcUAGCUGaGCuUGG- -5'
16250 5' -52 NC_004084.1 + 51186 0.67 0.870736
Target:  5'- gCGCCgaucGUCG-AGGUCGGCgcuggcgCGGGCUa -3'
miRNA:   3'- -GCGGaa--CAGCgUCUAGCUGa------GCUUGG- -5'
16250 5' -52 NC_004084.1 + 35224 0.67 0.854312
Target:  5'- aGCCgacgaUCGC-GAUCGACgUCGAccACCu -3'
miRNA:   3'- gCGGaac--AGCGuCUAGCUG-AGCU--UGG- -5'
16250 5' -52 NC_004084.1 + 39554 0.7 0.684727
Target:  5'- gGCCag--CGC-GAUCGACUCGA-CCg -3'
miRNA:   3'- gCGGaacaGCGuCUAGCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 9404 0.7 0.706535
Target:  5'- aCGUCgUGUCGguCAcGAUCGACaCGGACCg -3'
miRNA:   3'- -GCGGaACAGC--GU-CUAGCUGaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 12440 0.7 0.728047
Target:  5'- aCGCCgUGacgacCGCAGGagcCGACUCGGACa -3'
miRNA:   3'- -GCGGaACa----GCGUCUa--GCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 8139 0.69 0.779924
Target:  5'- aCGCCUgGUCgGCAGAcgUCGAggacCUCGccGCCa -3'
miRNA:   3'- -GCGGAaCAG-CGUCU--AGCU----GAGCu-UGG- -5'
16250 5' -52 NC_004084.1 + 29244 0.69 0.78988
Target:  5'- aGUaCUcGUCGCGcc-CGGCUCGAACCa -3'
miRNA:   3'- gCG-GAaCAGCGUcuaGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 45455 0.68 0.799669
Target:  5'- aCGCCgcc-CGCgAGAUCGAagcCGAGCCu -3'
miRNA:   3'- -GCGGaacaGCG-UCUAGCUga-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 55209 0.68 0.827928
Target:  5'- gGCCgacacgGUacaccCGCAGAUCGcuCUCgGAACCg -3'
miRNA:   3'- gCGGaa----CA-----GCGUCUAGCu-GAG-CUUGG- -5'
16250 5' -52 NC_004084.1 + 39277 0.68 0.827928
Target:  5'- uCGUCgaucgcGUCGCGGAcUCGAUcgUCGAGCa -3'
miRNA:   3'- -GCGGaa----CAGCGUCU-AGCUG--AGCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.