Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16250 | 5' | -52 | NC_004084.1 | + | 18112 | 0.67 | 0.878576 |
Target: 5'- gGUCgagGUCGgGGAUgucCGGCUCGGcCCg -3' miRNA: 3'- gCGGaa-CAGCgUCUA---GCUGAGCUuGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 45018 | 0.67 | 0.862646 |
Target: 5'- aCGaUCgaGUCGCGGuUCaGCUCGAACUg -3' miRNA: 3'- -GC-GGaaCAGCGUCuAGcUGAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 15 | 0.67 | 0.862646 |
Target: 5'- gGUCUUcgaaGUCG-AGGUCGugUCGGccACCg -3' miRNA: 3'- gCGGAA----CAGCgUCUAGCugAGCU--UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 56831 | 0.67 | 0.854312 |
Target: 5'- uGCCaaccagCGCGGGccUCGAgcCUCGGGCCa -3' miRNA: 3'- gCGGaaca--GCGUCU--AGCU--GAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 36326 | 0.67 | 0.845742 |
Target: 5'- uCGUCUgcGUCGUAGAggUCGACcUGAACg -3' miRNA: 3'- -GCGGAa-CAGCGUCU--AGCUGaGCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 3910 | 0.68 | 0.798698 |
Target: 5'- uGCCg-GUUGUAGucGUCGAaggcgucCUCGAACCg -3' miRNA: 3'- gCGGaaCAGCGUC--UAGCU-------GAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 57630 | 0.69 | 0.759559 |
Target: 5'- uCGUCUcgagGUCGCGcGUCGcCUCGAcgaGCCg -3' miRNA: 3'- -GCGGAa---CAGCGUcUAGCuGAGCU---UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 11599 | 0.69 | 0.759559 |
Target: 5'- uCGCCgcagUUGUCGCAGGUcgCGACguugCuGGCCu -3' miRNA: 3'- -GCGG----AACAGCGUCUA--GCUGa---GcUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 42715 | 0.69 | 0.749171 |
Target: 5'- aCGaCCcUGUCGCGucggcgaguuGAUCGGCUgCGAGCg -3' miRNA: 3'- -GC-GGaACAGCGU----------CUAGCUGA-GCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 22806 | 0.67 | 0.878576 |
Target: 5'- gCGUCgagagggcGUCaCGGAUCGAUccguUCGAGCCg -3' miRNA: 3'- -GCGGaa------CAGcGUCUAGCUG----AGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 39325 | 0.67 | 0.878576 |
Target: 5'- cCGCCgcggUGCuGAUCGACgUCGAcguagacgGCCg -3' miRNA: 3'- -GCGGaacaGCGuCUAGCUG-AGCU--------UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 53187 | 0.66 | 0.886158 |
Target: 5'- aGCCaacUUGUCGagucuuccguGAUCGuCUCGAGCg -3' miRNA: 3'- gCGG---AACAGCgu--------CUAGCuGAGCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 31402 | 0.66 | 0.911241 |
Target: 5'- aCGCCgauaucggcgaaGUCGCAGA-CGACgCG-GCCg -3' miRNA: 3'- -GCGGaa----------CAGCGUCUaGCUGaGCuUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 19554 | 0.66 | 0.907306 |
Target: 5'- uGUCUUG-CGaCcGGUCGAgauccucacuCUCGAGCCa -3' miRNA: 3'- gCGGAACaGC-GuCUAGCU----------GAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 37487 | 0.66 | 0.900528 |
Target: 5'- uCGUCUUcGUCuCGGAcuucgUCGAUUCGGACg -3' miRNA: 3'- -GCGGAA-CAGcGUCU-----AGCUGAGCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 42131 | 0.66 | 0.900528 |
Target: 5'- uGCCguugaggugacUGUUGCAGGgacugcacUCGACUgcaGAACCg -3' miRNA: 3'- gCGGa----------ACAGCGUCU--------AGCUGAg--CUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 15179 | 0.66 | 0.899835 |
Target: 5'- aGCCgUGgUGCGGAUUccagcugGACUCGcACCa -3' miRNA: 3'- gCGGaACaGCGUCUAG-------CUGAGCuUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 37217 | 0.66 | 0.89633 |
Target: 5'- cCGCCgaUGuacuggaugauccgaUCGguGAUCGugUCGAugUc -3' miRNA: 3'- -GCGGa-AC---------------AGCguCUAGCugAGCUugG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 47047 | 0.66 | 0.886158 |
Target: 5'- uGCCagggUGcucgaaUCGUGuGcUCGACUCGAACCg -3' miRNA: 3'- gCGGa---AC------AGCGU-CuAGCUGAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 14738 | 0.66 | 0.886158 |
Target: 5'- gCGCCcguccGUCGCAGGcacUCGGCgCGGuagGCCc -3' miRNA: 3'- -GCGGaa---CAGCGUCU---AGCUGaGCU---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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