miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 5' -52 NC_004084.1 + 55209 0.68 0.827928
Target:  5'- gGCCgacacgGUacaccCGCAGAUCGcuCUCgGAACCg -3'
miRNA:   3'- gCGGaa----CA-----GCGUCUAGCu-GAG-CUUGG- -5'
16250 5' -52 NC_004084.1 + 36326 0.67 0.845742
Target:  5'- uCGUCUgcGUCGUAGAggUCGACcUGAACg -3'
miRNA:   3'- -GCGGAa-CAGCGUCU--AGCUGaGCUUGg -5'
16250 5' -52 NC_004084.1 + 56831 0.67 0.854312
Target:  5'- uGCCaaccagCGCGGGccUCGAgcCUCGGGCCa -3'
miRNA:   3'- gCGGaaca--GCGUCU--AGCU--GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 35224 0.67 0.854312
Target:  5'- aGCCgacgaUCGC-GAUCGACgUCGAccACCu -3'
miRNA:   3'- gCGGaac--AGCGuCUAGCUG-AGCU--UGG- -5'
16250 5' -52 NC_004084.1 + 15 0.67 0.862646
Target:  5'- gGUCUUcgaaGUCG-AGGUCGugUCGGccACCg -3'
miRNA:   3'- gCGGAA----CAGCgUCUAGCugAGCU--UGG- -5'
16250 5' -52 NC_004084.1 + 45018 0.67 0.862646
Target:  5'- aCGaUCgaGUCGCGGuUCaGCUCGAACUg -3'
miRNA:   3'- -GC-GGaaCAGCGUCuAGcUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 51186 0.67 0.870736
Target:  5'- gCGCCgaucGUCG-AGGUCGGCgcuggcgCGGGCUa -3'
miRNA:   3'- -GCGGaa--CAGCgUCUAGCUGa------GCUUGG- -5'
16250 5' -52 NC_004084.1 + 20850 0.67 0.878576
Target:  5'- uCGCCgaggGUgGCAcGUCGAC-CGcGCCg -3'
miRNA:   3'- -GCGGaa--CAgCGUcUAGCUGaGCuUGG- -5'
16250 5' -52 NC_004084.1 + 18112 0.67 0.878576
Target:  5'- gGUCgagGUCGgGGAUgucCGGCUCGGcCCg -3'
miRNA:   3'- gCGGaa-CAGCgUCUA---GCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 22806 0.67 0.878576
Target:  5'- gCGUCgagagggcGUCaCGGAUCGAUccguUCGAGCCg -3'
miRNA:   3'- -GCGGaa------CAGcGUCUAGCUG----AGCUUGG- -5'
16250 5' -52 NC_004084.1 + 39325 0.67 0.878576
Target:  5'- cCGCCgcggUGCuGAUCGACgUCGAcguagacgGCCg -3'
miRNA:   3'- -GCGGaacaGCGuCUAGCUG-AGCU--------UGG- -5'
16250 5' -52 NC_004084.1 + 12023 0.66 0.886158
Target:  5'- uCGCC--GUCGCcGAucgUCGAUUCGA-CCu -3'
miRNA:   3'- -GCGGaaCAGCGuCU---AGCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 8283 0.66 0.886158
Target:  5'- aCGaCCUcGucauccggacgaUCGCGGGccUCGACUCGAaguACCg -3'
miRNA:   3'- -GC-GGAaC------------AGCGUCU--AGCUGAGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 47047 0.66 0.886158
Target:  5'- uGCCagggUGcucgaaUCGUGuGcUCGACUCGAACCg -3'
miRNA:   3'- gCGGa---AC------AGCGU-CuAGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 14738 0.66 0.886158
Target:  5'- gCGCCcguccGUCGCAGGcacUCGGCgCGGuagGCCc -3'
miRNA:   3'- -GCGGaa---CAGCGUCU---AGCUGaGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 53187 0.66 0.886158
Target:  5'- aGCCaacUUGUCGagucuuccguGAUCGuCUCGAGCg -3'
miRNA:   3'- gCGG---AACAGCgu--------CUAGCuGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 37217 0.66 0.89633
Target:  5'- cCGCCgaUGuacuggaugauccgaUCGguGAUCGugUCGAugUc -3'
miRNA:   3'- -GCGGa-AC---------------AGCguCUAGCugAGCUugG- -5'
16250 5' -52 NC_004084.1 + 15179 0.66 0.899835
Target:  5'- aGCCgUGgUGCGGAUUccagcugGACUCGcACCa -3'
miRNA:   3'- gCGGaACaGCGUCUAG-------CUGAGCuUGG- -5'
16250 5' -52 NC_004084.1 + 45731 0.66 0.900528
Target:  5'- aCGCg--GU-GCuGGUCGGCUaCGAACCa -3'
miRNA:   3'- -GCGgaaCAgCGuCUAGCUGA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 42131 0.66 0.900528
Target:  5'- uGCCguugaggugacUGUUGCAGGgacugcacUCGACUgcaGAACCg -3'
miRNA:   3'- gCGGa----------ACAGCGUCU--------AGCUGAg--CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.