Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16250 | 5' | -52 | NC_004084.1 | + | 39325 | 0.67 | 0.878576 |
Target: 5'- cCGCCgcggUGCuGAUCGACgUCGAcguagacgGCCg -3' miRNA: 3'- -GCGGaacaGCGuCUAGCUG-AGCU--------UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 20850 | 0.67 | 0.878576 |
Target: 5'- uCGCCgaggGUgGCAcGUCGAC-CGcGCCg -3' miRNA: 3'- -GCGGaa--CAgCGUcUAGCUGaGCuUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 51186 | 0.67 | 0.870736 |
Target: 5'- gCGCCgaucGUCG-AGGUCGGCgcuggcgCGGGCUa -3' miRNA: 3'- -GCGGaa--CAGCgUCUAGCUGa------GCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 45018 | 0.67 | 0.862646 |
Target: 5'- aCGaUCgaGUCGCGGuUCaGCUCGAACUg -3' miRNA: 3'- -GC-GGaaCAGCGUCuAGcUGAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 15 | 0.67 | 0.862646 |
Target: 5'- gGUCUUcgaaGUCG-AGGUCGugUCGGccACCg -3' miRNA: 3'- gCGGAA----CAGCgUCUAGCugAGCU--UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 56831 | 0.67 | 0.854312 |
Target: 5'- uGCCaaccagCGCGGGccUCGAgcCUCGGGCCa -3' miRNA: 3'- gCGGaaca--GCGUCU--AGCU--GAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 35224 | 0.67 | 0.854312 |
Target: 5'- aGCCgacgaUCGC-GAUCGACgUCGAccACCu -3' miRNA: 3'- gCGGaac--AGCGuCUAGCUG-AGCU--UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 36326 | 0.67 | 0.845742 |
Target: 5'- uCGUCUgcGUCGUAGAggUCGACcUGAACg -3' miRNA: 3'- -GCGGAa-CAGCGUCU--AGCUGaGCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 39277 | 0.68 | 0.827928 |
Target: 5'- uCGUCgaucgcGUCGCGGAcUCGAUcgUCGAGCa -3' miRNA: 3'- -GCGGaa----CAGCGUCU-AGCUG--AGCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 55209 | 0.68 | 0.827928 |
Target: 5'- gGCCgacacgGUacaccCGCAGAUCGcuCUCgGAACCg -3' miRNA: 3'- gCGGaa----CA-----GCGUCUAGCu-GAG-CUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 45455 | 0.68 | 0.799669 |
Target: 5'- aCGCCgcc-CGCgAGAUCGAagcCGAGCCu -3' miRNA: 3'- -GCGGaacaGCG-UCUAGCUga-GCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 3910 | 0.68 | 0.798698 |
Target: 5'- uGCCg-GUUGUAGucGUCGAaggcgucCUCGAACCg -3' miRNA: 3'- gCGGaaCAGCGUC--UAGCU-------GAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 29244 | 0.69 | 0.78988 |
Target: 5'- aGUaCUcGUCGCGcc-CGGCUCGAACCa -3' miRNA: 3'- gCG-GAaCAGCGUcuaGCUGAGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 8139 | 0.69 | 0.779924 |
Target: 5'- aCGCCUgGUCgGCAGAcgUCGAggacCUCGccGCCa -3' miRNA: 3'- -GCGGAaCAG-CGUCU--AGCU----GAGCu-UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 57630 | 0.69 | 0.759559 |
Target: 5'- uCGUCUcgagGUCGCGcGUCGcCUCGAcgaGCCg -3' miRNA: 3'- -GCGGAa---CAGCGUcUAGCuGAGCU---UGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 11599 | 0.69 | 0.759559 |
Target: 5'- uCGCCgcagUUGUCGCAGGUcgCGACguugCuGGCCu -3' miRNA: 3'- -GCGG----AACAGCGUCUA--GCUGa---GcUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 42715 | 0.69 | 0.749171 |
Target: 5'- aCGaCCcUGUCGCGucggcgaguuGAUCGGCUgCGAGCg -3' miRNA: 3'- -GC-GGaACAGCGU----------CUAGCUGA-GCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 12440 | 0.7 | 0.728047 |
Target: 5'- aCGCCgUGacgacCGCAGGagcCGACUCGGACa -3' miRNA: 3'- -GCGGaACa----GCGUCUa--GCUGAGCUUGg -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 9404 | 0.7 | 0.706535 |
Target: 5'- aCGUCgUGUCGguCAcGAUCGACaCGGACCg -3' miRNA: 3'- -GCGGaACAGC--GU-CUAGCUGaGCUUGG- -5' |
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16250 | 5' | -52 | NC_004084.1 | + | 39554 | 0.7 | 0.684727 |
Target: 5'- gGCCag--CGC-GAUCGACUCGA-CCg -3' miRNA: 3'- gCGGaacaGCGuCUAGCUGAGCUuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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