miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 5' -52 NC_004084.1 + 29244 0.69 0.78988
Target:  5'- aGUaCUcGUCGCGcc-CGGCUCGAACCa -3'
miRNA:   3'- gCG-GAaCAGCGUcuaGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 31402 0.66 0.911241
Target:  5'- aCGCCgauaucggcgaaGUCGCAGA-CGACgCG-GCCg -3'
miRNA:   3'- -GCGGaa----------CAGCGUCUaGCUGaGCuUGG- -5'
16250 5' -52 NC_004084.1 + 35224 0.67 0.854312
Target:  5'- aGCCgacgaUCGC-GAUCGACgUCGAccACCu -3'
miRNA:   3'- gCGGaac--AGCGuCUAGCUG-AGCU--UGG- -5'
16250 5' -52 NC_004084.1 + 36326 0.67 0.845742
Target:  5'- uCGUCUgcGUCGUAGAggUCGACcUGAACg -3'
miRNA:   3'- -GCGGAa-CAGCGUCU--AGCUGaGCUUGg -5'
16250 5' -52 NC_004084.1 + 37217 0.66 0.89633
Target:  5'- cCGCCgaUGuacuggaugauccgaUCGguGAUCGugUCGAugUc -3'
miRNA:   3'- -GCGGa-AC---------------AGCguCUAGCugAGCUugG- -5'
16250 5' -52 NC_004084.1 + 37487 0.66 0.900528
Target:  5'- uCGUCUUcGUCuCGGAcuucgUCGAUUCGGACg -3'
miRNA:   3'- -GCGGAA-CAGcGUCU-----AGCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 38874 0.72 0.622859
Target:  5'- aGCCagaGUUGCGGGaagaagacagcgucuUCGAgCUCGAACCg -3'
miRNA:   3'- gCGGaa-CAGCGUCU---------------AGCU-GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 39277 0.68 0.827928
Target:  5'- uCGUCgaucgcGUCGCGGAcUCGAUcgUCGAGCa -3'
miRNA:   3'- -GCGGaa----CAGCGUCU-AGCUG--AGCUUGg -5'
16250 5' -52 NC_004084.1 + 39325 0.67 0.878576
Target:  5'- cCGCCgcggUGCuGAUCGACgUCGAcguagacgGCCg -3'
miRNA:   3'- -GCGGaacaGCGuCUAGCUG-AGCU--------UGG- -5'
16250 5' -52 NC_004084.1 + 39554 0.7 0.684727
Target:  5'- gGCCag--CGC-GAUCGACUCGA-CCg -3'
miRNA:   3'- gCGGaacaGCGuCUAGCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 40269 0.66 0.913809
Target:  5'- aCGCUcg--CGCuGAUCGACcCGGACUc -3'
miRNA:   3'- -GCGGaacaGCGuCUAGCUGaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 42131 0.66 0.900528
Target:  5'- uGCCguugaggugacUGUUGCAGGgacugcacUCGACUgcaGAACCg -3'
miRNA:   3'- gCGGa----------ACAGCGUCU--------AGCUGAg--CUUGG- -5'
16250 5' -52 NC_004084.1 + 42715 0.69 0.749171
Target:  5'- aCGaCCcUGUCGCGucggcgaguuGAUCGGCUgCGAGCg -3'
miRNA:   3'- -GC-GGaACAGCGU----------CUAGCUGA-GCUUGg -5'
16250 5' -52 NC_004084.1 + 44622 0.66 0.900528
Target:  5'- uCGCCUcgGUCGCgaccaaccGGAcgCGAuCUcCGAGCCc -3'
miRNA:   3'- -GCGGAa-CAGCG--------UCUa-GCU-GA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 45018 0.67 0.862646
Target:  5'- aCGaUCgaGUCGCGGuUCaGCUCGAACUg -3'
miRNA:   3'- -GC-GGaaCAGCGUCuAGcUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 45455 0.68 0.799669
Target:  5'- aCGCCgcc-CGCgAGAUCGAagcCGAGCCu -3'
miRNA:   3'- -GCGGaacaGCG-UCUAGCUga-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 45731 0.66 0.900528
Target:  5'- aCGCg--GU-GCuGGUCGGCUaCGAACCa -3'
miRNA:   3'- -GCGgaaCAgCGuCUAGCUGA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 47047 0.66 0.886158
Target:  5'- uGCCagggUGcucgaaUCGUGuGcUCGACUCGAACCg -3'
miRNA:   3'- gCGGa---AC------AGCGU-CuAGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 47137 0.74 0.488902
Target:  5'- uCGCCcucacUGUU-CAGGUCGAgCUCGAACCg -3'
miRNA:   3'- -GCGGa----ACAGcGUCUAGCU-GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 48559 0.66 0.907306
Target:  5'- -aCCUcGUCGCGG-UCGAggCGAAUCa -3'
miRNA:   3'- gcGGAaCAGCGUCuAGCUgaGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.